Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ASO14_RS14365 Genome accession   NZ_CP013217
Coordinates   2873525..2874058 (+) Length   177 a.a.
NCBI ID   WP_068456903.1    Uniprot ID   A0A0X1S084
Organism   Kurthia sp. 11kri321     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2868525..2879058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASO14_RS14335 (ASO14_2906) - 2869171..2870010 (+) 840 WP_068456888.1 ParB/RepB/Spo0J family partition protein -
  ASO14_RS14340 (ASO14_2907) - 2870161..2871069 (+) 909 WP_231726963.1 mechanosensitive ion channel family protein -
  ASO14_RS14345 (ASO14_2908) - 2871072..2871278 (+) 207 WP_068456891.1 DUF951 domain-containing protein -
  ASO14_RS14350 (ASO14_2909) ychF 2871355..2872455 (+) 1101 WP_068456893.1 redox-regulated ATPase YchF -
  ASO14_RS14355 (ASO14_2910) - 2872474..2873037 (-) 564 WP_068456896.1 DUF3267 domain-containing protein -
  ASO14_RS14360 (ASO14_2911) rpsF 2873196..2873486 (+) 291 WP_068456899.1 30S ribosomal protein S6 -
  ASO14_RS14365 (ASO14_2912) ssbA 2873525..2874058 (+) 534 WP_068456903.1 single-stranded DNA-binding protein Machinery gene
  ASO14_RS14370 (ASO14_2913) rpsR 2874095..2874331 (+) 237 WP_068456906.1 30S ribosomal protein S18 -
  ASO14_RS14375 (ASO14_2914) - 2874495..2875448 (+) 954 WP_068456909.1 YybS family protein -
  ASO14_RS14380 (ASO14_2915) - 2875461..2877437 (+) 1977 WP_068456912.1 DHH family phosphoesterase -
  ASO14_RS14385 (ASO14_2916) rplI 2877434..2877883 (+) 450 WP_068456915.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19635.48 Da        Isoelectric Point: 4.9222

>NTDB_id=160767 ASO14_RS14365 WP_068456903.1 2873525..2874058(+) (ssbA) [Kurthia sp. 11kri321]
MINRVVLVGRLTKDPELRYTPSGVAVARFTLAVNRTFSNQQGERQADFINIVVWRKQAENTANFLRKGSLAGVEGRIQTG
SYDGQDGKKVYTTEVVADSVQFLEPRNAGGGAPQTNQQFGDQPSYGGGQSYNQAPQQNNYQQNQSPNQQNYTRVEQDPFA
MPNDQGKVDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=160767 ASO14_RS14365 WP_068456903.1 2873525..2874058(+) (ssbA) [Kurthia sp. 11kri321]
ATGATTAACCGTGTTGTATTAGTTGGAAGACTTACAAAAGATCCAGAGCTTCGTTATACGCCATCTGGTGTAGCAGTTGC
ACGTTTTACACTTGCTGTAAACCGTACATTCTCGAACCAACAAGGCGAAAGACAAGCAGACTTCATTAATATCGTCGTTT
GGCGTAAGCAAGCCGAAAACACAGCTAATTTCCTTCGTAAAGGTTCTTTAGCGGGTGTTGAGGGTCGCATCCAAACAGGT
AGTTATGATGGTCAAGATGGTAAAAAAGTTTACACAACTGAAGTTGTTGCAGATAGCGTACAGTTCTTAGAACCTCGCAA
TGCAGGCGGCGGTGCTCCACAAACGAACCAACAATTTGGTGACCAACCATCGTATGGTGGCGGTCAATCGTATAACCAAG
CACCACAGCAAAACAATTATCAGCAAAATCAATCACCAAATCAACAAAACTATACACGTGTAGAACAAGATCCATTTGCG
ATGCCAAATGATCAAGGTAAAGTTGACATCTCAGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X1S084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.017

100

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

52.747

100

0.542
  ssb Glaesserella parasuis strain SC1401

36.559

100

0.384
  ssb Neisseria meningitidis MC58

35.87

100

0.373
  ssb Neisseria gonorrhoeae MS11

35.87

100

0.373
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.887

0.367

Multiple sequence alignment