Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AOB58_RS02115 | Genome accession | NZ_CP012968 |
| Coordinates | 413661..413987 (+) | Length | 108 a.a. |
| NCBI ID | WP_021339251.1 | Uniprot ID | - |
| Organism | Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 408661..418987
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOB58_RS02085 | - | 408808..409008 (+) | 201 | WP_002512453.1 | YqgQ family protein | - |
| AOB58_RS02090 (AOB58_393) | - | 409598..410584 (+) | 987 | WP_021339255.1 | glucokinase | - |
| AOB58_RS02095 (AOB58_394) | - | 410584..410907 (+) | 324 | WP_021339254.1 | MTH1187 family thiamine-binding protein | - |
| AOB58_RS02100 (AOB58_395) | - | 410909..411532 (+) | 624 | WP_002507502.1 | MBL fold metallo-hydrolase | - |
| AOB58_RS02105 (AOB58_396) | comGA | 411632..412606 (+) | 975 | WP_021339253.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AOB58_RS02110 (AOB58_397) | comGB | 412578..413645 (+) | 1068 | WP_021339252.1 | competence type IV pilus assembly protein ComGB | - |
| AOB58_RS02115 (AOB58_398) | comGC | 413661..413987 (+) | 327 | WP_021339251.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AOB58_RS02120 (AOB58_399) | comGD | 413965..414411 (+) | 447 | WP_064782888.1 | competence type IV pilus minor pilin ComGD | - |
| AOB58_RS13720 (AOB58_400) | - | 414398..414880 (+) | 483 | WP_237283165.1 | hypothetical protein | - |
| AOB58_RS13725 (AOB58_401) | - | 414880..415110 (+) | 231 | WP_237283166.1 | ComGF family competence protein | - |
| AOB58_RS02140 (AOB58_402) | - | 415317..415790 (+) | 474 | WP_236593604.1 | shikimate kinase | - |
| AOB58_RS02145 (AOB58_403) | gcvT | 415969..417060 (+) | 1092 | WP_064782889.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AOB58_RS02150 (AOB58_404) | gcvPA | 417078..418430 (+) | 1353 | WP_021339245.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 108 a.a. Molecular weight: 12080.23 Da Isoelectric Point: 9.0691
>NTDB_id=158637 AOB58_RS02115 WP_021339251.1 413661..413987(+) (comGC) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
MHFLKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELV
SEGYINESQKRCKTGSTISINNGEAVAN
MHFLKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELV
SEGYINESQKRCKTGSTISINNGEAVAN
Nucleotide
Download Length: 327 bp
>NTDB_id=158637 AOB58_RS02115 WP_021339251.1 413661..413987(+) (comGC) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
ATGCATTTTTTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAAT
CATAAGTTTATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTC
AAATAAAAATGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTC
TCAGAAGGATATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGC
TAACTAA
ATGCATTTTTTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAAT
CATAAGTTTATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTC
AAATAAAAATGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTC
TCAGAAGGATATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGC
TAACTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
69.608 |
94.444 |
0.657 |
| comGC | Staphylococcus aureus MW2 |
69.608 |
94.444 |
0.657 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
44.762 |
97.222 |
0.435 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
40.741 |
100 |
0.407 |
| comGC/cglC | Streptococcus mitis SK321 |
44.565 |
85.185 |
0.38 |
| comGC/cglC | Streptococcus pneumoniae R6 |
43.478 |
85.185 |
0.37 |
| comGC/cglC | Streptococcus pneumoniae D39 |
43.478 |
85.185 |
0.37 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
43.478 |
85.185 |
0.37 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
43.478 |
85.185 |
0.37 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.489 |
87.037 |
0.361 |