Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   APQ97_RS07350 Genome accession   NZ_CP012911
Coordinates   1479612..1479827 (-) Length   71 a.a.
NCBI ID   WP_024395066.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474612..1484827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS12800 - 1475068..1475199 (-) 132 WP_255199035.1 hypothetical protein -
  APQ97_RS07315 (APQ97_07305) - 1475213..1475434 (-) 222 WP_004195135.1 hypothetical protein -
  APQ97_RS07320 (APQ97_07310) - 1475470..1475655 (-) 186 WP_004194666.1 helix-turn-helix transcriptional regulator -
  APQ97_RS07325 (APQ97_07315) - 1475670..1475870 (-) 201 WP_024417669.1 helix-turn-helix transcriptional regulator -
  APQ97_RS12805 - 1476013..1476141 (+) 129 WP_255199034.1 hypothetical protein -
  APQ97_RS07330 (APQ97_07320) - 1476131..1476451 (-) 321 WP_024417670.1 ImmA/IrrE family metallo-endopeptidase -
  APQ97_RS12450 - 1476585..1476749 (-) 165 WP_153308570.1 hypothetical protein -
  APQ97_RS07335 (APQ97_07325) - 1476892..1477647 (+) 756 WP_024417671.1 XRE family transcriptional regulator -
  APQ97_RS07340 (APQ97_07330) - 1477822..1478256 (+) 435 WP_014636688.1 type II toxin-antitoxin system PemK/MazF family toxin -
  APQ97_RS07345 (APQ97_07335) - 1478382..1479476 (+) 1095 WP_061286144.1 tyrosine-type recombinase/integrase -
  APQ97_RS07350 (APQ97_07340) prx 1479612..1479827 (-) 216 WP_024395066.1 hypothetical protein Regulator
  APQ97_RS07355 (APQ97_07345) - 1480002..1480751 (-) 750 WP_053866423.1 BRO family protein -
  APQ97_RS07360 (APQ97_07350) - 1480753..1480983 (-) 231 WP_024395064.1 hypothetical protein -
  APQ97_RS07365 (APQ97_07355) - 1481107..1481286 (-) 180 WP_024395063.1 hypothetical protein -
  APQ97_RS12340 - 1481489..1481650 (-) 162 WP_099779929.1 CopG family transcriptional regulator -
  APQ97_RS07370 (APQ97_07360) - 1481846..1482565 (-) 720 WP_024395062.1 CHAP domain-containing protein -
  APQ97_RS07375 (APQ97_07365) - 1482549..1482899 (-) 351 WP_002937841.1 phage holin -
  APQ97_RS07380 (APQ97_07370) - 1482902..1483201 (-) 300 WP_014636661.1 hypothetical protein -
  APQ97_RS07385 (APQ97_07375) - 1483205..1483549 (-) 345 WP_002937844.1 hypothetical protein -
  APQ97_RS07390 (APQ97_07380) - 1483552..1483770 (-) 219 WP_002937846.1 hypothetical protein -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 8355.57 Da        Isoelectric Point: 4.8537

>NTDB_id=158219 APQ97_RS07350 WP_024395066.1 1479612..1479827(-) (prx) [Streptococcus suis strain NSUI060]
MLEYEELKQAVDDGYITGDTVNIVRRDGKIFDYVLPGEEVRPWEVVREEKVVDVMRELKSSPQIRPKSFKK

Nucleotide


Download         Length: 216 bp        

>NTDB_id=158219 APQ97_RS07350 WP_024395066.1 1479612..1479827(-) (prx) [Streptococcus suis strain NSUI060]
ATGTTAGAATACGAAGAATTAAAACAAGCAGTAGATGACGGATATATTACAGGCGATACAGTAAATATCGTACGTCGTGA
CGGCAAGATATTTGATTATGTTTTGCCAGGCGAAGAGGTCAGACCATGGGAAGTAGTGAGAGAAGAGAAAGTAGTGGATG
TGATGAGGGAATTGAAGTCGTCGCCCCAAATCCGCCCCAAAAGTTTTAAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

68.966

81.69

0.563
  prx Streptococcus pyogenes MGAS315

65.517

81.69

0.535
  prx Streptococcus pyogenes MGAS8232

65.517

81.69

0.535
  prx Streptococcus pyogenes MGAS315

60.345

81.69

0.493
  prx Streptococcus pyogenes MGAS315

73.81

59.155

0.437
  prx Streptococcus pyogenes MGAS315

73.171

57.746

0.423
  prx Streptococcus pyogenes MGAS315

68.293

57.746

0.394

Multiple sequence alignment