Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AOY38_RS02325 Genome accession   NZ_CP012832
Coordinates   491186..491551 (+) Length   121 a.a.
NCBI ID   WP_014407071.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-G     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 486186..496551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY38_RS02310 (AOY38_02310) - 486346..487455 (-) 1110 WP_010871651.1 TIGR00303 family protein -
  AOY38_RS02315 (AOY38_02315) - 487569..489479 (+) 1911 WP_014407070.1 AMP-binding protein -
  AOY38_RS02320 (AOY38_02320) - 489824..490990 (+) 1167 WP_010871653.1 response regulator -
  AOY38_RS02325 (AOY38_02325) pilH 491186..491551 (+) 366 WP_014407071.1 response regulator Machinery gene
  AOY38_RS02330 (AOY38_02330) - 491598..492161 (+) 564 WP_010871655.1 chemotaxis protein CheW -
  AOY38_RS02335 (AOY38_02335) pilJ 492232..494841 (+) 2610 WP_010871656.1 methyl-accepting chemotaxis protein Machinery gene
  AOY38_RS02340 (AOY38_02340) - 494930..495721 (+) 792 WP_010871657.1 MlaE family lipid ABC transporter permease subunit -
  AOY38_RS02345 (AOY38_02345) - 495851..496108 (+) 258 WP_041425909.1 TatA/E family twin arginine-targeting protein translocase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13674.90 Da        Isoelectric Point: 5.8739

>NTDB_id=157829 AOY38_RS02325 WP_014407071.1 491186..491551(+) (pilH) [Synechocystis sp. PCC 6803 substr. GT-G]
MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLRN

Nucleotide


Download         Length: 366 bp        

>NTDB_id=157829 AOY38_RS02325 WP_014407071.1 491186..491551(+) (pilH) [Synechocystis sp. PCC 6803 substr. GT-G]
ATGAACGCAGTTTTGCTGGTTGAAGACAGCTCTAGTCAGCGCGAGATGATATCTGGCATCCTCAAAGACCATGGCTGGCA
GGTCACCATCGCCTGTGATGGGGTGGAGGCCCTGGAAAAATTGCAGAATTTTAGTCCGGACCTAGTGGTGCTAGATATTG
TCATGCCCCGCATGAATGGCTATGAGGTTTGTCGACGCATCAAATCCGATCCGAAAACCAAAAATGTGCCAGTGATTATG
TGCTCCTCCAAGGGGGAGGAATTTGACCGTTTTTGGGGCATGCGTCAGGGAGCCGACGCCTACATTGCCAAACCATTTCA
GCCCATGGAACTGGTGGGCACCATCAAACAACTCCTGCGCAATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

100

100

1
  pilG Acinetobacter baumannii strain A118

41.593

93.388

0.388
  chpA Acinetobacter baumannii strain A118

39.655

95.868

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment