Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AOY20_RS01450 Genome accession   NZ_CP012808
Coordinates   312750..313091 (-) Length   113 a.a.
NCBI ID   WP_227510356.1    Uniprot ID   -
Organism   Acinetobacter equi strain 114     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307750..318091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS01420 (AOY20_01420) - 307827..308096 (-) 270 WP_054580219.1 HPr family phosphocarrier protein -
  AOY20_RS01425 (AOY20_01425) rapZ 308093..308944 (-) 852 WP_054580220.1 RNase adapter RapZ -
  AOY20_RS01430 (AOY20_01430) panC 308967..309812 (-) 846 WP_054580221.1 pantoate--beta-alanine ligase -
  AOY20_RS01435 (AOY20_01435) panB 309817..310626 (-) 810 WP_054580222.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AOY20_RS01440 (AOY20_01440) folK 310668..311159 (-) 492 WP_054580223.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AOY20_RS01445 (AOY20_01445) pcnB 311156..312616 (-) 1461 WP_054580224.1 polynucleotide adenylyltransferase PcnB -
  AOY20_RS01450 (AOY20_01450) comEA 312750..313091 (-) 342 WP_227510356.1 ComEA family DNA-binding protein Machinery gene
  AOY20_RS01455 (AOY20_01455) mazG 313153..313926 (-) 774 WP_054580225.1 nucleoside triphosphate pyrophosphohydrolase -
  AOY20_RS01460 (AOY20_01460) - 314292..314693 (+) 402 WP_054580226.1 hypothetical protein -
  AOY20_RS01465 (AOY20_01465) der 314759..316168 (-) 1410 WP_054580227.1 ribosome biogenesis GTPase Der -
  AOY20_RS01470 (AOY20_01470) bamB 316337..317485 (-) 1149 WP_054580228.1 outer membrane protein assembly factor BamB -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12826.65 Da        Isoelectric Point: 10.1438

>NTDB_id=157735 AOY20_RS01450 WP_227510356.1 312750..313091(-) (comEA) [Acinetobacter equi strain 114]
MSFNQQVLAQSYDQKYLEWKLKQETHDRTFKGKESTVNDTLGTSGQYATTNKIKLNSATVNELQQLTGIGLKKAEAIIEY
RNKNGKFKSIEDIQQVKGIGLSLFEKNKLKLAL

Nucleotide


Download         Length: 342 bp        

>NTDB_id=157735 AOY20_RS01450 WP_227510356.1 312750..313091(-) (comEA) [Acinetobacter equi strain 114]
TTGAGCTTTAATCAGCAGGTTTTAGCTCAATCCTATGATCAAAAATATCTAGAATGGAAGTTAAAACAAGAAACACATGA
TCGTACCTTCAAGGGAAAAGAAAGTACTGTAAATGATACATTAGGAACATCGGGACAATATGCGACGACAAATAAAATAA
AACTGAATTCAGCAACAGTAAATGAATTACAACAGCTAACCGGTATTGGTTTAAAAAAAGCTGAAGCAATTATTGAATAT
CGAAATAAAAATGGAAAATTTAAATCTATTGAAGATATTCAGCAAGTAAAAGGGATCGGTCTATCTTTATTTGAAAAGAA
TAAGCTAAAACTTGCACTTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(50-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

50.909

97.345

0.496
  comEA Acinetobacter baumannii strain A118

50.909

97.345

0.496
  comEA Acinetobacter baylyi ADP1

47.706

96.46

0.46
  comEA/celA/cilE Streptococcus mitis SK321

39.45

96.46

0.381
  comEA/celA/cilE Streptococcus pneumoniae Rx1

38.318

94.69

0.363
  comEA/celA/cilE Streptococcus pneumoniae D39

38.318

94.69

0.363
  comEA/celA/cilE Streptococcus pneumoniae R6

38.318

94.69

0.363

Multiple sequence alignment