Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AOT13_RS03175 Genome accession   NZ_CP012712
Coordinates   630519..631013 (+) Length   164 a.a.
NCBI ID   WP_003253855.1    Uniprot ID   A0AB38QYG4
Organism   Parageobacillus thermoglucosidasius strain DSM 2542     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 625519..636013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT13_RS03150 (AOT13_03135) - 625628..626530 (+) 903 WP_042385781.1 mechanosensitive ion channel family protein -
  AOT13_RS03155 (AOT13_03140) - 626552..626746 (+) 195 WP_013401910.1 DUF951 domain-containing protein -
  AOT13_RS03160 (AOT13_03145) - 626790..628802 (+) 2013 WP_042385779.1 molybdopterin-dependent oxidoreductase -
  AOT13_RS03165 (AOT13_03150) ychF 628998..630098 (+) 1101 WP_042385777.1 redox-regulated ATPase YchF -
  AOT13_RS03170 (AOT13_03155) rpsF 630203..630490 (+) 288 WP_003253857.1 30S ribosomal protein S6 -
  AOT13_RS03175 (AOT13_03160) ssbA 630519..631013 (+) 495 WP_003253855.1 single-stranded DNA-binding protein Machinery gene
  AOT13_RS03180 (AOT13_03165) rpsR 631063..631302 (+) 240 WP_003253854.1 30S ribosomal protein S18 -
  AOT13_RS03185 (AOT13_03170) - 631400..632326 (+) 927 WP_232511557.1 YybS family protein -
  AOT13_RS03190 (AOT13_03175) - 632379..634355 (+) 1977 WP_003253850.1 DHH family phosphoesterase -
  AOT13_RS03195 (AOT13_03180) rplI 634352..634798 (+) 447 WP_003253848.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18431.26 Da        Isoelectric Point: 4.5870

>NTDB_id=156682 AOT13_RS03175 WP_003253855.1 630519..631013(+) (ssbA) [Parageobacillus thermoglucosidasius strain DSM 2542]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGERETDFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVVADSVQFLEPKSSTEQRGTAAGGYYGEPFPFGQNQNHRNPNENDFSRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=156682 AOT13_RS03175 WP_003253855.1 630519..631013(+) (ssbA) [Parageobacillus thermoglucosidasius strain DSM 2542]
ATGATTAATCGCGTAATTCTTGTGGGAAGGCTGACGAGAGATCCGGAATTACGCTATACTCCAAGTGGGGTGGCTGTTGC
TACATTTACGCTTGCTGTCAACCGCCCGTTTACAAACCAGCAAGGTGAACGGGAAACGGATTTTATTAACTGCGTCGTTT
GGCGGCGCCAGGCGGAAAATGTCGCGAATTTCTTGAAAAAGGGAAGTTTAGCCGGAGTAGACGGTCGTTTGCAAACCCGC
AGCTATGAAGGTCAAGATGGCAGACGTGTGTATGTGACGGAAGTGGTTGCTGATAGCGTCCAATTTCTTGAGCCGAAAAG
TAGCACTGAACAGCGTGGCACGGCAGCAGGCGGCTATTATGGGGAGCCATTCCCATTTGGACAAAATCAGAACCATCGCA
ACCCAAATGAAAATGATTTTAGTCGCATAGATGAAGATCCTTTTGCAAACGATGGACAACCGATCGATATTTCAGACGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.241

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.622
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

64.634

0.402
  ssb Glaesserella parasuis strain SC1401

35.593

100

0.384
  ssb Vibrio cholerae strain A1552

34.463

100

0.372
  ssb Neisseria meningitidis MC58

33.898

100

0.366
  ssb Neisseria gonorrhoeae MS11

33.898

100

0.366

Multiple sequence alignment