Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RN80_RS00505 Genome accession   NZ_CP012646
Coordinates   92570..94549 (-) Length   659 a.a.
NCBI ID   WP_020902007.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 87570..99549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS00485 (RN80_00490) amiF 88068..88994 (-) 927 WP_049523558.1 ATP-binding cassette domain-containing protein Regulator
  RN80_RS00490 (RN80_00495) amiE 89005..90072 (-) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  RN80_RS00495 (RN80_00500) amiD 90081..91007 (-) 927 WP_060627155.1 oligopeptide ABC transporter permease OppC Regulator
  RN80_RS00500 (RN80_00505) amiC 91007..92503 (-) 1497 WP_000759915.1 ABC transporter permease Regulator
  RN80_RS00505 (RN80_00510) amiA 92570..94549 (-) 1980 WP_020902007.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS00515 (RN80_00520) - 94975..96306 (-) 1332 WP_049543730.1 hemolysin family protein -
  RN80_RS00520 (RN80_00525) endA 96575..97399 (-) 825 WP_049543728.1 DNA-entry nuclease EndA Machinery gene
  RN80_RS00525 (RN80_00530) - 97438..97626 (-) 189 WP_025169706.1 DNA-directed RNA polymerase subunit beta -
  RN80_RS00530 (RN80_00535) murA 97619..98902 (-) 1284 WP_060627156.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RN80_RS00535 (RN80_00540) - 98926..99156 (-) 231 WP_000250396.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72999.16 Da        Isoelectric Point: 4.8883

>NTDB_id=155968 RN80_RS00505 WP_020902007.1 92570..94549(-) (amiA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKKSRVFVAAGVALLATGVLVACGNSKSSDSTAPKTYGYVYSADPETLDYIISGKESTKVATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLAGNSKDFSTV
GVKAVDDYTLEYTLNQPEPYWNSKMVYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKENVHLDTATLAYFDGSDQESLERNFTSGAYSFARLYPTSSNFSKVEESYKDNIFYTPSGAGIGGLGVNIDRQNYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTGYSAQVNGKEGAPLAVRNLFVKPDFVTAGEKTFGDLVAEKVKTYGDEWKD
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTSKNFVARIQSFKQSVEKVLGEENVVIDIQQISKDE
FFNATYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKSTNSEQTKTYMGYDDPSNAAAAKVGVKDYDKLLDEAGKETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKGSNLYFKYIQLQDKVVTKADYEQAREKWI
KEKKESNEKVQKELTKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=155968 RN80_RS00505 WP_020902007.1 92570..94549(-) (amiA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAAAAAAGTAGAGTCTTTGTTGCAGCAGGAGTTGCTTTATTGGCAACAGGTGTGTTAGTAGCTTGTGGGAATTCAAA
ATCATCTGATTCGACAGCTCCAAAAACCTATGGCTATGTCTATTCGGCTGACCCAGAAACATTAGATTATATTATTTCTG
GAAAAGAGAGTACGAAAGTGGCTACTTCAAACGGGATCGATGGCCTCTTCACAAATGACAAATACGGGAATTTGACTCCT
GCGGTTGCAGAAGACTGGTCTGTATCAAAAGATGGATTGACATATACCTACAAAATTCGTAAAGGTGTCAAATGGATGAC
ATCCGATGGTGAAGAATATGCCGAAGTGACTGCTAAAGACTTCGTGAATGGATTGAAACATGCGGCAGATAAGAAATCAG
AAGCTCTATATCTAGCTGAAACTTCTGTTAAAGGTTTATCTGATTATTTGGCTGGGAATTCAAAAGATTTCTCTACAGTA
GGTGTTAAAGCGGTTGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAACCTTACTGGAACTCTAAGATGGTTTA
TTCAATTTTCTGGCCATTAAACGAAGAATTTGAAAAATCAAAAGGCTCTGATTTTGCTAAAGCGACAGATCCTACATCAT
TGCTATATAATGGACCTTTCTTGCTTAAAGGTTTGACTGCTAAATCTTCTATCGAATTTGCTAAGAACGAGCAGTACTGG
GATAAAGAGAATGTTCATTTAGATACAGCAACACTTGCATATTTTGATGGTTCGGACCAAGAATCACTTGAGCGTAACTT
TACAAGTGGAGCTTATAGTTTTGCTCGTCTTTACCCAACAAGTTCAAACTTCTCAAAGGTAGAGGAGTCATACAAGGATA
ATATTTTCTACACTCCGTCAGGAGCTGGTATTGGAGGTTTAGGTGTAAATATCGATCGACAAAATTACAAATATACATCT
AAAACGACAGATGAAGAGAAAACATCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGCCAAGCCTTGAACTTTGCCTT
TGACCGTACAGGTTATTCTGCTCAAGTTAACGGTAAAGAAGGTGCTCCTCTCGCAGTTCGTAATTTATTTGTGAAACCAG
ACTTTGTGACTGCAGGCGAAAAAACTTTCGGTGACTTGGTTGCTGAAAAAGTTAAGACTTATGGAGATGAGTGGAAAGAT
GTAAACTTTGCTGATGGTCAAGACGGTCTCTTTAACGCTGACAAAGCTAAAGCAGAATTTGCTAAAGCTAAAACTGCTCT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATGTTCCAGTAGACCAAACCTCTAAAAACTTTGTCGCACGGATTC
AGTCGTTCAAACAATCAGTTGAAAAAGTTTTAGGCGAAGAAAATGTTGTCATCGATATTCAACAAATTTCTAAAGATGAA
TTCTTTAATGCGACTTATTATGCTGCTAATGCGGCAGCTGAGGATTGGGATCTTTCAGGTGCGGTTGGATGGAATCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCCTTAAATCAACTAATAGTGAGCAAACGAAAACTTATATGGGGTATGATG
ACCCATCAAATGCAGCTGCAGCTAAAGTTGGTGTGAAAGATTACGATAAATTGCTTGATGAAGCTGGAAAAGAAACAAGT
GATCTTAACAAACGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACAGACAGTTCACTCTTCTTACCAGCTATGTC
TTCTAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCTCAGCTTCTTATAGCCAATCTGGAGACAAAGGTTCAA
ATCTCTACTTCAAATATATTCAGTTACAAGACAAAGTTGTAACAAAGGCTGATTATGAACAAGCTCGTGAGAAATGGATT
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACTAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.285

100

0.683
  amiA3 Streptococcus thermophilus LMD-9

68.03

100

0.681
  amiA3 Streptococcus thermophilus LMG 18311

67.727

100

0.678

Multiple sequence alignment