Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RN80_RS00500 Genome accession   NZ_CP012646
Coordinates   91007..92503 (-) Length   498 a.a.
NCBI ID   WP_000759915.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 86007..97503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS00480 (RN80_00485) - 86638..87615 (-) 978 WP_060627154.1 ABC transporter substrate-binding protein -
  RN80_RS00485 (RN80_00490) amiF 88068..88994 (-) 927 WP_049523558.1 ATP-binding cassette domain-containing protein Regulator
  RN80_RS00490 (RN80_00495) amiE 89005..90072 (-) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  RN80_RS00495 (RN80_00500) amiD 90081..91007 (-) 927 WP_060627155.1 oligopeptide ABC transporter permease OppC Regulator
  RN80_RS00500 (RN80_00505) amiC 91007..92503 (-) 1497 WP_000759915.1 ABC transporter permease Regulator
  RN80_RS00505 (RN80_00510) amiA 92570..94549 (-) 1980 WP_020902007.1 peptide ABC transporter substrate-binding protein Regulator
  RN80_RS00515 (RN80_00520) - 94975..96306 (-) 1332 WP_049543730.1 hemolysin family protein -
  RN80_RS00520 (RN80_00525) endA 96575..97399 (-) 825 WP_049543728.1 DNA-entry nuclease EndA Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55788.31 Da        Isoelectric Point: 9.3386

>NTDB_id=155967 RN80_RS00500 WP_000759915.1 91007..92503(-) (amiC) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANSPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGF
LTFLMALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=155967 RN80_RS00500 WP_000759915.1 91007..92503(-) (amiC) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAGAAATATATTTTTATGCGTGTCTTGCGGTCATTGGTTTCTATCTTCTTAGTAACAACCTTGACTTACACGATTAT
CTATACAATGGTTCCTCGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCGACAACTGCTGATAAGCGTG
ATAACTATGAGAACACTGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAGGAATTGCAAGAAAAAGCCAGC
CAGATGGATGCCTCTGTAACAGTTGAAGCTAATGACACCAACAAGGCTATCTATGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCTTGGGAGAATTTACTGAAAGTGGCCAATTCTACGCTACTCGTGAAATCCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGATATTGACCATACAAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTATCTT
CGTTTTGAAAACGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGTACTAAACACAAATATCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTGCATCAAAACTTTGTGAACATCAATTTAGGTGACTCTTATCCAACCTATGCTAATAGCCCTGTTT
TACAGGTTATTACTCAAGGACAAGGACAAACAAAAACATCTCAAGTTCAGTTCCCAACAGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTATAAATCACCTAGTCAGGCTGATTCTCGTGAAGTAGCAAACTACGGAAAAGATGATCCTTA
TACAGCTACAGAAAGTAACTACCAATATCCTTCAATGATTGCCAGCTCTGCTGTTGTTGGATTGATCGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAATACTTGGATTGATAGCTTCTCAACAGGGTTT
TTGACCTTCTTGATGGCCCTTCCAACCATTGCTTTGGTTTACATTGTTCGTTTGATTGGATCATCAATTGGTCTTCCAGA
TTCATTCCCTATTTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTTATCCTTGGTTTATTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAGGACTTTGTTCGTTTTGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTAGTTTCAGGAATTCCTGGTGCTGTTAT
CGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACGATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761

Multiple sequence alignment