Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RN80_RS00485 Genome accession   NZ_CP012646
Coordinates   88068..88994 (-) Length   308 a.a.
NCBI ID   WP_049523558.1    Uniprot ID   A0A0M4JJL6
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 83068..93994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS00460 (RN80_00465) - 83870..84118 (-) 249 WP_000364990.1 YneF family protein -
  RN80_RS00465 (RN80_00470) - 84260..84847 (-) 588 Protein_92 alpha-glucosidase C-terminal domain-containing protein -
  RN80_RS00470 (RN80_00475) - 84917..85720 (-) 804 WP_000157661.1 ABC transporter ATP-binding protein -
  RN80_RS00475 (RN80_00480) - 85733..86626 (-) 894 WP_060627153.1 ABC transporter permease -
  RN80_RS00480 (RN80_00485) - 86638..87615 (-) 978 WP_060627154.1 ABC transporter substrate-binding protein -
  RN80_RS00485 (RN80_00490) amiF 88068..88994 (-) 927 WP_049523558.1 ATP-binding cassette domain-containing protein Regulator
  RN80_RS00490 (RN80_00495) amiE 89005..90072 (-) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  RN80_RS00495 (RN80_00500) amiD 90081..91007 (-) 927 WP_060627155.1 oligopeptide ABC transporter permease OppC Regulator
  RN80_RS00500 (RN80_00505) amiC 91007..92503 (-) 1497 WP_000759915.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34819.84 Da        Isoelectric Point: 6.3167

>NTDB_id=155964 RN80_RS00485 WP_049523558.1 88068..88994(-) (amiF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=155964 RN80_RS00485 WP_049523558.1 88068..88994(-) (amiF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTCAATGATACAAGTAATGGAGATATCATTTTTGAAGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAGTTGATTCGTCGTATCCAGATGATTTTTCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCAGAAGGTCTTTACAATCACCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAGGTTAAAAATATTA
TCCGTGAAGTGGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAGTTTTCAGGTGGTCAACGTCAACGTATCGGT
ATCGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCGGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACTTATCTCTTTATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAAGTATATGATCCAGATCAACATGATTATGAGACAGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTGGCGCGTTACCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4JJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment