Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RN80_RS00495 Genome accession   NZ_CP012646
Coordinates   90081..91007 (-) Length   308 a.a.
NCBI ID   WP_060627155.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 85081..96007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS00475 (RN80_00480) - 85733..86626 (-) 894 WP_060627153.1 ABC transporter permease -
  RN80_RS00480 (RN80_00485) - 86638..87615 (-) 978 WP_060627154.1 ABC transporter substrate-binding protein -
  RN80_RS00485 (RN80_00490) amiF 88068..88994 (-) 927 WP_049523558.1 ATP-binding cassette domain-containing protein Regulator
  RN80_RS00490 (RN80_00495) amiE 89005..90072 (-) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  RN80_RS00495 (RN80_00500) amiD 90081..91007 (-) 927 WP_060627155.1 oligopeptide ABC transporter permease OppC Regulator
  RN80_RS00500 (RN80_00505) amiC 91007..92503 (-) 1497 WP_000759915.1 ABC transporter permease Regulator
  RN80_RS00505 (RN80_00510) amiA 92570..94549 (-) 1980 WP_020902007.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34555.59 Da        Isoelectric Point: 9.6860

>NTDB_id=155966 RN80_RS00495 WP_060627155.1 90081..91007(-) (amiD) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILLAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=155966 RN80_RS00495 WP_060627155.1 90081..91007(-) (amiD) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGCTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGTAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTACAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTCGCCATGAGTGTAACAACATGGATTGGAATTGCCTTCAT
GATTCGTGTGCAAATCTTGCGTTACCGTGACTTGGAATACAACTTGGCGTCACGTACTCTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCAATTACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACTAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment