Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   AMD33_RS03820 Genome accession   NZ_CP012588
Coordinates   724694..724852 (-) Length   52 a.a.
NCBI ID   WP_014608276.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 719694..729852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS03795 (AMD33_03770) cas1 719856..720860 (-) 1005 WP_014727507.1 CRISPR-associated endonuclease Cas1 -
  AMD33_RS03800 (AMD33_03775) - 720999..721946 (-) 948 WP_014608279.1 dihydroorotate dehydrogenase -
  AMD33_RS03805 (AMD33_03780) - 721965..722738 (-) 774 WP_011681108.1 dihydroorotate dehydrogenase electron transfer subunit -
  AMD33_RS03810 (AMD33_03785) - 723009..723557 (-) 549 WP_014608278.1 DJ-1 family glyoxalase III -
  AMD33_RS12270 - 723599..723823 (-) 225 WP_011227180.1 TraX family protein -
  AMD33_RS03815 (AMD33_03790) - 723824..724492 (-) 669 WP_014621543.1 TraX family protein -
  AMD33_RS03820 (AMD33_03795) prx 724694..724852 (-) 159 WP_014608276.1 hypothetical protein Regulator
  AMD33_RS03825 (AMD33_03800) - 725349..725540 (-) 192 WP_011681104.1 hypothetical protein -
  AMD33_RS03830 (AMD33_03805) - 725544..726028 (-) 485 Protein_739 NUDIX hydrolase -
  AMD33_RS03835 (AMD33_03810) - 726334..727290 (-) 957 WP_014727508.1 DUF6994 family protein -
  AMD33_RS03840 (AMD33_03815) - 727613..729271 (+) 1659 WP_014608275.1 NFACT family protein -

Sequence

Protein


Download         Length: 52 a.a.        Molecular weight: 5835.59 Da        Isoelectric Point: 4.6646

>NTDB_id=155609 AMD33_RS03820 WP_014608276.1 724694..724852(-) (prx) [Streptococcus thermophilus strain MN-BM-A01]
MDNGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGGDN

Nucleotide


Download         Length: 159 bp        

>NTDB_id=155609 AMD33_RS03820 WP_014608276.1 724694..724852(-) (prx) [Streptococcus thermophilus strain MN-BM-A01]
ATGGACAACGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACTACGTTTTAGACGG
TGAACGAGTTGAGCCACACGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAAGAACTAGGCGGAGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

54.167

92.308

0.5
  prx Streptococcus pyogenes MGAS8232

53.061

94.231

0.5
  prx Streptococcus pyogenes MGAS315

51.02

94.231

0.481
  prx Streptococcus pyogenes MGAS315

50

92.308

0.462
  prx Streptococcus pyogenes MGAS315

71.875

61.538

0.442
  prx Streptococcus pyogenes MGAS315

61.765

65.385

0.404
  prx Streptococcus pyogenes MGAS315

70

57.692

0.404

Multiple sequence alignment