Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   A214_RS24245 Genome accession   NZ_CP015877
Coordinates   5315715..5316044 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa SJTD-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5310715..5321044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A214_RS24230 (A214_24225) uvrB 5312103..5314115 (-) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene
  A214_RS24235 (A214_24230) - 5314303..5315499 (+) 1197 WP_017149201.1 amino acid aminotransferase -
  A214_RS24245 (A214_24240) comEA/comE1 5315715..5316044 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  A214_RS24250 (A214_24245) - 5316235..5318232 (-) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  A214_RS24255 (A214_24250) - 5318327..5319355 (-) 1029 WP_003116434.1 MraY family glycosyltransferase -
  A214_RS24260 (A214_24255) - 5319548..5320753 (-) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=155573 A214_RS24245 WP_003091430.1 5315715..5316044(-) (comEA/comE1) [Pseudomonas aeruginosa SJTD-1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=155573 A214_RS24245 WP_003091430.1 5315715..5316044(-) (comEA/comE1) [Pseudomonas aeruginosa SJTD-1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATTGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment