Detailed information NTG0155587

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AN158_RS17920
• Genome accession: NZ_CP012587
• Coordinates: 2236298..2237158 (-)
• Length: 286 a.a.
• NCBI ID: WP_069370672.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain CA-17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2231298..2242158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AN158_RS10320 (AN158_10315)	-	2232189..2233499 (+)	1311	WP_069370669.1	tetratricopeptide repeat protein	-
AN158_RS10325 (AN158_10320)	-	2233576..2233902 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AN158_RS10330 (AN158_10325)	rlmB	2234004..2234753 (+)	750	WP_069370670.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AN158_RS10335 (AN158_10330)	-	2234789..2235703 (+)	915	WP_000075014.1	DMT family transporter	-
AN158_RS10340 (AN158_10335)	coaE	2235700..2236296 (-)	597	WP_069370671.1	dephospho-CoA kinase	-
AN158_RS17920 (AN158_10340)	pilD	2236298..2237158 (-)	861	WP_069370672.1	prepilin peptidase	Machinery gene
AN158_RS10350 (AN158_10345)	pilC	2237158..2238384 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
AN158_RS10355 (AN158_10350)	pilB	2238414..2240126 (-)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AN158_RS10360 (AN158_10355)	tpiA	2240417..2241211 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
AN158_RS10365 (AN158_10360)	secG	2241224..2241553 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32070.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=155587 AN158_RS17920 WP_069370672.1 2236298..2237158(-) (pilD) [Acinetobacter baumannii strain CA-17]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=155587 AN158_RS17920 WP_069370672.1 2236298..2237158(-) (pilD) [Acinetobacter baumannii strain CA-17]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTCTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441