Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AFK25_RS14560 Genome accession   NZ_CP012152
Coordinates   2789837..2790328 (-) Length   163 a.a.
NCBI ID   WP_026011473.1    Uniprot ID   A0AAW7THL2
Organism   Anoxybacillus gonensis strain G2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2784837..2795328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK25_RS14540 (AFK25_14565) rplI 2786135..2786584 (-) 450 WP_009361073.1 50S ribosomal protein L9 -
  AFK25_RS14545 (AFK25_14570) - 2786581..2788554 (-) 1974 WP_035067232.1 DHH family phosphoesterase -
  AFK25_RS14550 (AFK25_14575) - 2788576..2789508 (-) 933 WP_035067247.1 YybS family protein -
  AFK25_RS14555 (AFK25_14580) rpsR 2789570..2789806 (-) 237 WP_003397568.1 30S ribosomal protein S18 -
  AFK25_RS14560 (AFK25_14585) ssbA 2789837..2790328 (-) 492 WP_026011473.1 single-stranded DNA-binding protein Machinery gene
  AFK25_RS14565 (AFK25_14590) rpsF 2790355..2790642 (-) 288 WP_009361077.1 30S ribosomal protein S6 -
  AFK25_RS14570 (AFK25_14595) ychF 2790747..2791847 (-) 1101 WP_009361078.1 redox-regulated ATPase YchF -
  AFK25_RS14575 (AFK25_14600) - 2791868..2792044 (-) 177 WP_178378767.1 DUF951 domain-containing protein -
  AFK25_RS14580 (AFK25_14605) - 2792086..2792961 (-) 876 WP_035067249.1 mechanosensitive ion channel family protein -
  AFK25_RS14585 (AFK25_14610) yyaC 2793144..2793734 (+) 591 WP_009361081.1 spore protease YyaC -
  AFK25_RS14590 (AFK25_14615) - 2793726..2794430 (-) 705 WP_019416591.1 DUF554 domain-containing protein -
  AFK25_RS14595 (AFK25_14620) - 2794444..2795307 (-) 864 WP_019416590.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18112.00 Da        Isoelectric Point: 4.6708

>NTDB_id=151938 AFK25_RS14560 WP_026011473.1 2789837..2790328(-) (ssbA) [Anoxybacillus gonensis strain G2]
MINRVILVGRLTKDPELRYTPNGVAVATFTLAVNRTYTNQQGERETDFINCIVWRRQAENVANYLKKGSLAGLEGRIQTR
SYENQEGKKVYVTEVVADSVQFLEPRGGGEQRGMASGSYGEPFPFGSNQNPNQGRSSGFSRIDDDPFANDGQPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=151938 AFK25_RS14560 WP_026011473.1 2789837..2790328(-) (ssbA) [Anoxybacillus gonensis strain G2]
ATGATTAATCGCGTAATTCTCGTCGGAAGACTGACGAAAGATCCGGAATTACGCTATACTCCAAATGGAGTTGCTGTTGC
CACGTTTACGCTAGCGGTAAACCGAACATATACAAACCAACAAGGTGAACGTGAAACAGATTTTATTAACTGTATCGTTT
GGCGCCGGCAAGCTGAAAATGTGGCGAACTATTTGAAAAAAGGTAGTTTAGCTGGATTAGAAGGTCGAATTCAAACGAGA
TCATATGAAAACCAAGAAGGAAAAAAAGTGTATGTGACAGAGGTTGTCGCCGATAGCGTGCAGTTTTTAGAGCCGCGAGG
TGGCGGTGAGCAACGTGGCATGGCATCAGGCAGCTATGGCGAGCCGTTTCCATTTGGATCAAATCAGAACCCGAACCAAG
GACGTAGCAGCGGATTTAGTCGAATTGATGATGATCCATTTGCGAACGATGGACAACCAATCGACATATCGGATGATGAT
TTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.391

100

0.73
  ssb Latilactobacillus sakei subsp. sakei 23K

56

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.031

0.417
  ssb Neisseria meningitidis MC58

36.723

100

0.399
  ssb Neisseria gonorrhoeae MS11

36.158

100

0.393
  ssb Vibrio cholerae strain A1552

35.754

100

0.393
  ssb Glaesserella parasuis strain SC1401

34.831

100

0.38

Multiple sequence alignment