Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AC610_RS17225 Genome accession   NZ_CP012063
Coordinates   3767016..3768272 (+) Length   418 a.a.
NCBI ID   WP_039573972.1    Uniprot ID   A0A3Q9Q1T7
Organism   Xanthomonas phaseoli pv. phaseoli strain ISO18C8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3765618..3772152 3767016..3768272 within 0


Gene organization within MGE regions


Location: 3765618..3772152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC610_RS17220 (AC610_16410) - 3765618..3766844 (-) 1227 WP_011345585.1 IS256-like element ISXax1 family transposase -
  AC610_RS17225 (AC610_16415) pilC 3767016..3768272 (+) 1257 WP_039573972.1 type II secretion system F family protein Machinery gene
  AC610_RS17230 (AC610_16420) - 3768279..3769142 (+) 864 WP_039573976.1 A24 family peptidase -
  AC610_RS17235 (AC610_16425) coaE 3769153..3769764 (+) 612 WP_007962470.1 dephospho-CoA kinase -
  AC610_RS24745 - 3769946..3771016 (+) 1071 WP_157926032.1 RHS repeat domain-containing protein -
  AC610_RS17245 (AC610_16435) - 3771065..3772152 (+) 1088 WP_099770620.1 IS3-like element ISXac2 family transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45411.79 Da        Isoelectric Point: 10.2788

>NTDB_id=150973 AC610_RS17225 WP_039573972.1 3767016..3768272(+) (pilC) [Xanthomonas phaseoli pv. phaseoli strain ISO18C8]
MSAVRNAVKTKTAAPAEQMSPFIWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALIGAAIGSVFAYKRSPAMQHGMDRLVLKAPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=150973 AC610_RS17225 WP_039573972.1 3767016..3768272(+) (pilC) [Xanthomonas phaseoli pv. phaseoli strain ISO18C8]
ATGTCAGCAGTACGTAACGCAGTCAAGACGAAGACCGCCGCACCGGCGGAGCAGATGAGCCCGTTTATCTGGGAGGGAAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGTGCCGAGCTGCGACGCCAGG
GCATTACCCCCCTCGTTGTGAAAGTTAAGCCGAAGCCACTATTCGGCGCTGCAGGAAAGAAGGTCTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAATCGGGCGTGCCGATTGTCGGCGCGCTAGAGATCATTGGTAGCGG
CCAGAAAAATCCGCGCATGCGCACAATGGTTGGCCAGATCAGGACAGATATCGAAGGCGGGGCATCGCTTTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAAGCAGGCGAAGGCGCAGGCGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAGAACCTTGAAGCCCTAAAAGGCAAGATCAAGAAGGCCCTGTTCTACCCTGC
CATGGTAATGGCGGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTCCCCCAATTTGAAGATGTCTTCAAAG
GCTTTGGCGCTGAGCTGCCTGCTTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTATTGGCGCTGCAATCGGTTCTGTTTTCGCGTACAAACGTTCACCAGCAATGCAACATGGCATGGACCG
TTTAGTGCTAAAAGCGCCAATCATTGGCCAGATCATGCATAACAGCTCAATTGCAAGATTCGCCCGGACAACGGCGGTTA
CATTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGCAACTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCGGTGGGCTACCCGGTCAACGTAGCGATGAAACAGGTCAACCTGTTTCCGCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAAGCGGGCGCGCTGGATGCCATGTTGTTCAAGGTGGCTGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9Q1T7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.696

97.608

0.514
  pilC Pseudomonas stutzeri DSM 10701

52.593

96.89

0.51
  pilC Acinetobacter baumannii D1279779

51.613

96.411

0.498
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilG Neisseria meningitidis 44/76-A

43.21

96.89

0.419
  pilG Neisseria gonorrhoeae MS11

43.069

96.651

0.416
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

39.706

97.608

0.388

Multiple sequence alignment