Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   AXW93_RS27700 Genome accession   NZ_CP014866
Coordinates   5848499..5849023 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA_154197     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5843499..5854023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW93_RS27685 (AXW93_26845) aroB 5844615..5845721 (-) 1107 WP_080911875.1 3-dehydroquinate synthase -
  AXW93_RS27690 (AXW93_26850) aroK 5845771..5846289 (-) 519 WP_003095833.1 shikimate kinase AroK -
  AXW93_RS27695 (AXW93_26855) pilQ 5846301..5848445 (-) 2145 WP_080911876.1 type 4a pilus secretin PilQ Machinery gene
  AXW93_RS27700 (AXW93_26860) comL/pilP 5848499..5849023 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AXW93_RS27705 (AXW93_26865) pilO 5849020..5849643 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  AXW93_RS27710 (AXW93_26870) pilN 5849640..5850236 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  AXW93_RS27715 (AXW93_26875) pilM 5850236..5851300 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  AXW93_RS27720 (AXW93_26880) - 5851485..5853956 (+) 2472 WP_003110889.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=150490 AXW93_RS27700 WP_003095836.1 5848499..5849023(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_154197]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=150490 AXW93_RS27700 WP_003095836.1 5848499..5849023(-) (comL/pilP) [Pseudomonas aeruginosa strain PA_154197]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment