Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BSM4216_RS02425 Genome accession   NZ_CP012024
Coordinates   507796..508389 (-) Length   197 a.a.
NCBI ID   WP_003353530.1    Uniprot ID   G9QJQ6
Organism   Bacillus smithii strain DSM 4216     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 502796..513389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS02400 (BSM4216_0571) - 503889..504347 (+) 459 WP_003353537.1 8-oxo-dGTP diphosphatase -
  BSM4216_RS02405 (BSM4216_0572) rapZ 504365..505273 (+) 909 WP_003353536.1 RNase adapter RapZ -
  BSM4216_RS02410 (BSM4216_0573) - 505257..506249 (+) 993 WP_048622605.1 YvcK family protein -
  BSM4216_RS02415 (BSM4216_0574) whiA 506273..507232 (+) 960 WP_048622606.1 DNA-binding protein WhiA -
  BSM4216_RS02420 (BSM4216_0575) - 507353..507610 (+) 258 WP_048622607.1 HPr family phosphocarrier protein -
  BSM4216_RS02425 (BSM4216_0576) clpP 507796..508389 (-) 594 WP_003353530.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  BSM4216_RS02435 (BSM4216_0579) - 508963..509628 (-) 666 WP_048622608.1 MOSC domain-containing protein -
  BSM4216_RS17200 (BSM4216_0580) - 509990..511537 (+) 1548 WP_048622609.1 S-layer homology domain-containing protein -
  BSM4216_RS02450 (BSM4216_0582) rpoN 511921..513255 (+) 1335 WP_082142229.1 RNA polymerase factor sigma-54 -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21716.08 Da        Isoelectric Point: 5.3360

>NTDB_id=150490 BSM4216_RS02425 WP_003353530.1 507796..508389(-) (clpP) [Bacillus smithii strain DSM 4216]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDTVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIYDT
MQFIKPDVQTICIGMAASMGAFLLAAGTKGKRYALPNAEVMIHQPLGGAQGQATEIEIAAKRILFLKDKLNKILSERTGQ
PLEVIEKDTDRDNFMTAQRAKEYGLIDHIISRNDISK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=150490 BSM4216_RS02425 WP_003353530.1 507796..508389(-) (clpP) [Bacillus smithii strain DSM 4216]
ATGAACCTAATTCCTACAGTCATTGAACAAACAAACCGCGGGGAACGGGCGTACGATATTTACTCACGTTTGTTGAAAGA
CCGTATTATTATGTTGGGCAGCGCTATCGACGACACTGTCGCAAACTCTATTGTAGCTCAGCTTTTATTCCTTGAAGCAG
AAAATCCGGAAAAAGACATCTCCATTTACATTAACAGTCCCGGCGGAAGCATTACAGCCGGAATGGCGATTTATGATACA
ATGCAATTTATTAAACCGGATGTCCAAACTATTTGTATCGGGATGGCCGCTTCCATGGGAGCATTCTTGCTTGCAGCAGG
AACGAAAGGAAAACGTTATGCTCTTCCAAATGCCGAAGTGATGATCCATCAACCGCTTGGCGGCGCACAAGGTCAAGCAA
CCGAAATTGAAATTGCCGCTAAACGCATTTTGTTCTTAAAAGATAAATTAAACAAAATTTTATCAGAACGCACCGGCCAG
CCGCTCGAAGTCATTGAAAAAGACACAGACCGCGACAACTTTATGACGGCTCAACGCGCCAAAGAATATGGCTTAATTGA
CCATATCATTAGCCGAAACGATATCAGCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9QJQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

85.787

100

0.858
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.586

96.954

0.665
  clpP Lactococcus lactis subsp. cremoris KW2

58.462

98.985

0.579
  clpP Streptococcus thermophilus LMG 18311

58.462

98.985

0.579
  clpP Streptococcus thermophilus LMD-9

58.462

98.985

0.579
  clpP Streptococcus pneumoniae D39

57.143

99.492

0.569
  clpP Streptococcus pneumoniae Rx1

57.143

99.492

0.569
  clpP Streptococcus pneumoniae R6

57.143

99.492

0.569
  clpP Streptococcus pneumoniae TIGR4

57.143

99.492

0.569
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.41

98.985

0.558
  clpP Streptococcus mutans UA159

56.122

99.492

0.558
  clpP Streptococcus pyogenes JRS4

55.897

98.985

0.553
  clpP Streptococcus pyogenes MGAS315

55.897

98.985

0.553

Multiple sequence alignment