Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ACU17_RS15105 Genome accession   NZ_CP011959
Coordinates   3484869..3485999 (-) Length   376 a.a.
NCBI ID   WP_048488636.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain CFBP7341     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3479869..3490999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACU17_RS15070 (ACU17_15085) ruvX 3479957..3480424 (-) 468 WP_014502544.1 Holliday junction resolvase RuvX -
  ACU17_RS15075 (ACU17_15090) - 3480417..3480983 (-) 567 WP_024711782.1 YqgE/AlgH family protein -
  ACU17_RS26795 - 3481059..3482257 (+) 1199 Protein_2969 hypothetical protein -
  ACU17_RS15090 (ACU17_15105) - 3482254..3482826 (+) 573 WP_014502539.1 DNA-3-methyladenine glycosylase I -
  ACU17_RS15095 (ACU17_15110) - 3482863..3483696 (+) 834 WP_033005150.1 DUF72 domain-containing protein -
  ACU17_RS15100 (ACU17_15115) - 3483923..3484597 (-) 675 WP_024711780.1 YitT family protein -
  ACU17_RS15105 (ACU17_15120) pilU 3484869..3485999 (-) 1131 WP_048488636.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ACU17_RS15110 (ACU17_15125) pilT 3486113..3487150 (-) 1038 WP_014502535.1 type IV pilus twitching motility protein PilT Machinery gene
  ACU17_RS15115 (ACU17_15130) - 3487516..3488208 (+) 693 WP_044750693.1 YggS family pyridoxal phosphate-dependent enzyme -
  ACU17_RS15120 (ACU17_15135) proC 3488252..3489112 (+) 861 WP_014502533.1 pyrroline-5-carboxylate reductase -
  ACU17_RS15125 (ACU17_15140) - 3489196..3490515 (-) 1320 WP_144406543.1 IS701-like element ISXo15 family transposase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41958.20 Da        Isoelectric Point: 6.8287

>NTDB_id=149655 ACU17_RS15105 WP_048488636.1 3484869..3485999(-) (pilU) [Xanthomonas oryzae pv. oryzicola strain CFBP7341]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVNGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVDELSLPPVIKTLAMTKRGIIMFVGATGTGKSTSLAAMIGHRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWESALKNTLRQAPDVIMIGEVRAREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRSRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGMDGVEISEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=149655 ACU17_RS15105 WP_048488636.1 3484869..3485999(-) (pilU) [Xanthomonas oryzae pv. oryzicola strain CFBP7341]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCGTCGGACCTGTTCATCACCTCAGGGAT
GCCACCGGCGATCAAGGTGAATGGCAAGATCAGCCCGATTACCCAGACGCCGCTGACTGCGCAGCAGAGCCGCGATCTGG
TGTTGAACGTGATGACGCCCTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTTTCAGGG
GTGGGGCGTTTTCGTGTGAGCTGTTTCTACCAGCGTAATCAGGTCGGTATGGTGCTGCGCCGGATCGAAACGCGCATCCC
CACCGTGGACGAGTTGAGCCTGCCTCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATGTTCGTCGGCG
CCACCGGTACCGGTAAGTCGACCTCGCTGGCGGCGATGATCGGCCACCGCAACCAGAATTCCACCGGCCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAG
CTGGGAAAGCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTGCCCGCGAGGGCA
TGGACCACGCGATCGCCTTCGCCGAAACCGGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAATCAGGCGATG
GACCGCATCATCAACTTCTTCCCCGAAGACCGCCGCAATCAGCTGCTGATGGACCTGTCGCTCAATCTCAAGGGCGTGGT
GGCGCAGCAGCTGATTCCGACGCCGGATGGCCGCAGCCGCCGCGTTGCGATGGAAATCATGTTGGGTACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAAATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GACCAGAGCCTGTTCGAGCTCTACCAGGCTGGCGAAATCAGCTACGAAGATGCATTGCGCTACGCCGACTCGCAGAACGA
AGTGCGCTTGCGCATCAAGCTCTCGCAGGGGGGCGATGCCAAGACCTTGTCGCAGGGCATGGATGGTGTGGAGATTTCCG
AAGTTCGATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(108-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

66.485

97.606

0.649
  pilU Acinetobacter baylyi ADP1

64.706

94.947

0.614
  pilU Vibrio cholerae strain A1552

52.809

94.681

0.5
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.017

94.947

0.399
  pilT Acinetobacter nosocomialis M2

39.535

91.489

0.362
  pilT Acinetobacter baumannii D1279779

39.535

91.489

0.362
  pilT Acinetobacter baumannii strain A118

39.535

91.489

0.362

Multiple sequence alignment