Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB434_RS05005 Genome accession   NZ_CP011939
Coordinates   1073249..1073743 (-) Length   164 a.a.
NCBI ID   WP_014096622.1    Uniprot ID   A0AAU7WJ22
Organism   Heyndrickxia coagulans strain S-lac     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1068249..1078743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB434_RS04985 (AB434_1116) rplI 1069417..1069860 (-) 444 WP_014096625.1 50S ribosomal protein L9 -
  AB434_RS04990 (AB434_1117) - 1069857..1071830 (-) 1974 WP_035183090.1 DHH family phosphoesterase -
  AB434_RS04995 (AB434_1118) - 1071866..1072807 (-) 942 WP_142743397.1 YybS family protein -
  AB434_RS05000 (AB434_1119) rpsR 1072965..1073204 (-) 240 WP_013860883.1 30S ribosomal protein S18 -
  AB434_RS05005 (AB434_1120) ssbA 1073249..1073743 (-) 495 WP_014096622.1 single-stranded DNA-binding protein Machinery gene
  AB434_RS05010 (AB434_1121) rpsF 1073805..1074092 (-) 288 WP_014096621.1 30S ribosomal protein S6 -
  AB434_RS05015 (AB434_1122) ribE 1074346..1074816 (-) 471 WP_014096620.1 6,7-dimethyl-8-ribityllumazine synthase -
  AB434_RS05020 (AB434_1123) - 1074829..1076022 (-) 1194 WP_035183084.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  AB434_RS05025 (AB434_1124) - 1076040..1076687 (-) 648 WP_035183081.1 riboflavin synthase -
  AB434_RS05030 (AB434_1125) ribD 1076668..1077789 (-) 1122 WP_142010213.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18427.10 Da        Isoelectric Point: 4.6437

>NTDB_id=149501 AB434_RS05005 WP_014096622.1 1073249..1073743(-) (ssbA) [Heyndrickxia coagulans strain S-lac]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVVADSVQFLEPRSANQERGSSQNYGNNQGSAFPGYNQNQNQYQRNDSKPDEDPFSNDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=149501 AB434_RS05005 WP_014096622.1 1073249..1073743(-) (ssbA) [Heyndrickxia coagulans strain S-lac]
ATGTTGAACCGTGTTGTTCTCGTAGGCAGGCTGACAAAAGATCCCGATTTGCGCTATACGCCGAGCGGAGTAGCGGTTGC
TACTTTTACCCTGGCTGTAAACCGTACGTTTACAAACCAGCAGGGGGAAAGGGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAGCAGGCTGAAAATGTGGCCAACTACTTAAAAAAAGGAAGTCTGGCAGGCGTAGACGGCCGGATTCAGACACGC
AACTACGAAGCTCAGGACGGCCGGCGCGTGTATGTCACAGAGGTCGTGGCAGACAGCGTCCAGTTTCTTGAACCGAGAAG
TGCGAATCAGGAACGCGGCAGCAGCCAGAATTACGGGAACAACCAAGGGAGTGCTTTCCCGGGGTACAATCAGAATCAAA
ATCAGTATCAGCGTAATGATTCAAAGCCTGATGAAGATCCGTTCTCAAATGATGGACAACCGATTGACATCTCTGATGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.605

100

0.72
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.646
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.038

64.634

0.427
  ssb Glaesserella parasuis strain SC1401

35.593

100

0.384
  ssb Neisseria meningitidis MC58

34.426

100

0.384
  ssb Neisseria gonorrhoeae MS11

34.426

100

0.384
  ssb Vibrio cholerae strain A1552

35.028

100

0.378

Multiple sequence alignment