Detailed information NTG0148632

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC16_RS12110
• Genome accession: NZ_CP011775
• Coordinates: 2678074..2679066 (-)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain FORC_016
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2673074..2684066

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC16_RS12090 (FORC16_2398)	recX	2673101..2673562 (-)	462	WP_060530761.1	recombination regulator RecX	-
FORC16_RS12095 (FORC16_2399)	recA	2673666..2674715 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
FORC16_RS12100 (FORC16_2400)	pncC	2674850..2675353 (-)	504	WP_060530760.1	nicotinamide-nucleotide amidase	-
FORC16_RS12105 (FORC16_2401)	mutS	2675437..2677998 (+)	2562	WP_060530758.1	DNA mismatch repair protein MutS	-
FORC16_RS12110 (FORC16_2402)	rpoS	2678074..2679066 (-)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
FORC16_RS12115 (FORC16_2403)	-	2679147..2680043 (-)	897	WP_060530756.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC16_RS12120 (FORC16_2404)	-	2680087..2680713 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC16_RS12125 (FORC16_2405)	surE	2680716..2681483 (-)	768	WP_039554647.1	5'/3'-nucleotidase SurE	-
FORC16_RS12130 (FORC16_2406)	truD	2681489..2682532 (-)	1044	WP_060530754.1	tRNA pseudouridine(13) synthase TruD	-
FORC16_RS12135 (FORC16_2407)	ispF	2682568..2683044 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC16_RS12140 (FORC16_2408)	ispD	2683041..2683754 (-)	714	WP_060530752.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC16_RS12145 (FORC16_2409)	ftsB	2683754..2684035 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=148632 FORC16_RS12110 WP_045596855.1 2678074..2679066(-) (rpoS) [Vibrio vulnificus strain FORC_016]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=148632 FORC16_RS12110 WP_045596855.1 2678074..2679066(-) (rpoS) [Vibrio vulnificus strain FORC_016]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCAGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGAGGCTTCCGTTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGTTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833