Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PDR5_RS02075 Genome accession   NZ_CP011566
Coordinates   466047..468125 (+) Length   692 a.a.
NCBI ID   WP_039766429.1    Uniprot ID   -
Organism   Pseudomonas sp. DR 5-09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461047..473125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDR5_RS02055 (PDR5_04150) pilM 463261..464325 (+) 1065 WP_064592901.1 pilus assembly protein PilM Machinery gene
  PDR5_RS02060 (PDR5_04160) - 464325..464891 (+) 567 WP_064592903.1 PilN domain-containing protein -
  PDR5_RS02065 (PDR5_04170) pilO 464888..465511 (+) 624 WP_064592905.1 type 4a pilus biogenesis protein PilO -
  PDR5_RS02070 (PDR5_04180) - 465508..466032 (+) 525 WP_039766425.1 pilus assembly protein PilP -
  PDR5_RS02075 (PDR5_04190) pilQ 466047..468125 (+) 2079 WP_039766429.1 type IV pilus secretin PilQ Machinery gene
  PDR5_RS02080 (PDR5_04200) aroK 468130..468648 (+) 519 WP_011332081.1 shikimate kinase AroK -
  PDR5_RS02085 (PDR5_04210) aroB 468800..469900 (+) 1101 WP_064592907.1 3-dehydroquinate synthase -
  PDR5_RS02090 (PDR5_04220) - 469911..471512 (+) 1602 WP_064592909.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75007.13 Da        Isoelectric Point: 5.5724

>NTDB_id=146898 PDR5_RS02075 WP_039766429.1 466047..468125(+) (pilQ) [Pseudomonas sp. DR 5-09]
MNRIFSTLGFSLWIALLSPMVQAANLKALDVAALPGDRVELKLSFDGPPPQPKGYTTDSPARIALDLPGVASQLASKTRD
LGSGNARTATVVEANNRTRLIISLTQLAPYDTRVEGNTVFVVVGQGSKAAAPRTAARAPRAAPAAAPVRTFTPTARAIRG
VDFQRGTAGEGNVVIDLSDPAIAPDIQEHDGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNAGVSGDRATITVEPSGT
FDYSTYQTDNKLTVSIRPLTVDDLQKRNADRNSYNGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEAK
VDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVSN
GSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=146898 PDR5_RS02075 WP_039766429.1 466047..468125(+) (pilQ) [Pseudomonas sp. DR 5-09]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGCTTTCGCCGATGGTACAGGCAGCCAATCTGAA
GGCGCTGGACGTCGCGGCACTGCCGGGCGACCGGGTCGAGCTGAAGCTGTCGTTCGATGGCCCGCCTCCGCAGCCCAAGG
GCTACACCACCGATTCGCCGGCGCGGATCGCACTCGATCTGCCGGGTGTCGCCAGTCAGCTGGCAAGCAAGACCCGTGAC
CTGGGCAGTGGCAATGCCCGCACGGCCACGGTGGTCGAGGCCAATAACCGGACACGGCTGATCATCAGCCTGACGCAACT
GGCACCGTACGACACCCGGGTCGAAGGCAATACGGTGTTCGTGGTGGTCGGGCAAGGCAGCAAAGCCGCTGCCCCACGTA
CGGCGGCTCGTGCCCCGCGTGCAGCACCGGCGGCAGCGCCGGTCCGCACGTTTACGCCGACCGCCAGAGCCATTCGCGGC
GTGGATTTCCAGCGTGGCACGGCGGGCGAGGGCAACGTGGTCATCGACTTGTCCGACCCGGCTATCGCCCCGGACATCCA
GGAGCACGACGGCAAGATCATCCTCAATTTCGCCCGTACCCAATTGCCAGAACCGCTGCGGGTGCGCCTCGACGTCAAGG
ACTTCGCCACCCCGGTGCAGTTCGTCAATGCCGGGGTCAGCGGTGATCGGGCGACGATCACCGTCGAACCCAGCGGTACT
TTCGACTATTCCACTTACCAGACCGACAACAAGCTGACCGTCAGCATCCGGCCGTTGACCGTCGATGACCTGCAAAAACG
CAACGCCGATCGCAACAGCTATAACGGCGAAAAGCTCTCGCTGAATTTCCAGGACATCGATGTGCGTTCGGTGCTGCAAC
TGATCGCCGACTTCACCAACCTCAATCTGGTGGCCAGCGATACGGTGCAGGGCGGAATCACCTTGCGCCTGCAGAACGTG
CCGTGGGATCAGGCGCTGGATCTGGTGCTCAAGACCAAAGGCCTGGACAAGCGCAAGGTCGGCAACGTGTTGCTGGTGGC
GCCGGCGGATGAAATTGCTGCGCGCGAGCGGCAGGAACTGGAATCGCAGAAGCAGATCGCCGAACTGGCGCCGCTGCGTC
GTGAGCTATTGCAGGTGAACTACGCCAAGGCCGCCGACATCGCCAAGCTGTTCCAGTCTGTCACCAGCGCCGAGGCGAAG
GTCGACGAGCGGGGTTCGATCACCGTCGATGAGCGGACCAATAACATCATTGCCTACCAGACCCAGGATCGTCTCGACGA
ACTGCGGCGGATTGTGGCGCAGCTGGATATTCCGGTGCGTCAGGTGATGATCGAAGCGCGGATCGTCGAGGCCAACGTCG
ACTACGACAAGAGTCTGGGCGTGCGCTGGGGCGGTTCGATTCAGAACAAGGGCAACTGGAACACTTCCGGAGTCAGCAAC
GGTTCGTCGACCACCATTGGCACGCCGGGCAGCACTAGTACCAACTCGCCGTTCGTCGATATGGGCACGGTCAACAACAC
CTCCGGGATCGGCATCGCCTTTATCACCGACAACGTCTTGCTCGACCTTGAGCTGACCGCCATGGAGAAGACCGGCAACG
GCGAAATCGTCTCGCAGCCCAAGGTGGTCACCTCCGACAAGGAGACCGCGAAGATCCTCAAGGGCACCGAGATTCCGTAC
CAGGAAGCCAGCTCCAGCGGCGCTACGTCGGTGTCCTTCAAGGAGGCGTCGCTGTCGCTGGAAGTGACGCCGCAGATCAC
CCCGGACAACCGCATCATCATGGAGGTGAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGC
CGATCAAGAAAAACGAGGTCAATGCCAAGGTGCTGGTGAACGACGGCGAGACCATCGTGATTGGGGGCGTGTTCTCAAAT
ACTCAAAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

AMIN domain (AMIN)

(37-121)

Bacterial type II and III secretion system protein (Secretin)

(527-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.688

100

0.743
  pilQ Acinetobacter baumannii strain A118

37.784

100

0.409
  pilQ Acinetobacter baumannii D1279779

37.784

100

0.409
  comQ Acinetobacter baylyi ADP1

40.778

100

0.409
  pilQ Legionella pneumophila strain Lp02

37.63

97.543

0.367
  pilQ Legionella pneumophila strain ERS1305867

37.593

97.254

0.366

Multiple sequence alignment