Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PDR5_RS02055 Genome accession   NZ_CP011566
Coordinates   463261..464325 (+) Length   354 a.a.
NCBI ID   WP_064592901.1    Uniprot ID   -
Organism   Pseudomonas sp. DR 5-09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458261..469325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDR5_RS02045 (PDR5_04130) - 459100..460419 (-) 1320 WP_237233786.1 integrase core domain-containing protein -
  PDR5_RS02050 (PDR5_04140) - 460596..463043 (-) 2448 WP_064592899.1 penicillin-binding protein 1A -
  PDR5_RS02055 (PDR5_04150) pilM 463261..464325 (+) 1065 WP_064592901.1 pilus assembly protein PilM Machinery gene
  PDR5_RS02060 (PDR5_04160) - 464325..464891 (+) 567 WP_064592903.1 PilN domain-containing protein -
  PDR5_RS02065 (PDR5_04170) pilO 464888..465511 (+) 624 WP_064592905.1 type 4a pilus biogenesis protein PilO -
  PDR5_RS02070 (PDR5_04180) - 465508..466032 (+) 525 WP_039766425.1 pilus assembly protein PilP -
  PDR5_RS02075 (PDR5_04190) pilQ 466047..468125 (+) 2079 WP_039766429.1 type IV pilus secretin PilQ Machinery gene
  PDR5_RS02080 (PDR5_04200) aroK 468130..468648 (+) 519 WP_011332081.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38113.60 Da        Isoelectric Point: 4.6857

>NTDB_id=146897 PDR5_RS02055 WP_064592901.1 463261..464325(+) (pilM) [Pseudomonas sp. DR 5-09]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPASAVVEKNIAELEGVGQALSRVLVKARTGLKTVAV
AVAGSAVITKVIEMDSGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQDRLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEERLNTPTQVANP
FSDMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=146897 PDR5_RS02055 WP_064592901.1 463261..464325(+) (pilM) [Pseudomonas sp. DR 5-09]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGTTACTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTGGAGTT
GAGCCGTCAGGGGGAGCGCTACCGGGTCGAGGCGTATGCGGTGGAGCCGTTGCCGGCGAGTGCCGTGGTCGAAAAGAACA
TCGCCGAACTCGAGGGTGTTGGCCAGGCGCTGTCCCGGGTGTTGGTCAAGGCGCGTACCGGGTTGAAAACCGTGGCGGTG
GCCGTGGCCGGCTCGGCGGTGATCACCAAGGTCATCGAGATGGACTCCGGGCTGTCCGACGATGAACTGGAAAACCAGCT
CAAGATCGAGGCCGATCAATACATTCCCTACCCGCTGGACGAGGTCGCCATCGACTTTGAAGTCCAGGGCGTTTCGCCGC
GCAACCCCGAGCGGGTCAACGTACTGCTGGCCGCCTGTCGCAAGGAAAATGTCGAAGTCCGCGAAGCGGCGCTCGCTCTC
GCCGGGCTGACCGCGCGGGTGGTAGATGTAGAGGCGTATGCGCTGGAGCGCTCGTTCGGCCTGCTGGCCACGCAACTGGC
CGCGTCCCAGGATCGGTTGACGGTGGCGGTGGTCGACATCGGCGCCACCATGACCACCCTCAGCGTCCTGCACAACGGCC
GGATCATCTATACCCGCGAACAGCTGTTCGGCGGTCGACAGCTGACCGAGGAAATCCAGCGCCGTTATGGCCTCACCCTT
GAACAGGCGGGACTTGCCAAGAAGCAGGGCGGCCTGCCGGACGATTACGTCAGCGAGGTGCTGCAGCCATTTCGTGAGGC
GCTGGTGCAGCAGGTGTCGCGCTCCTTGCAGTTCTTTTTTGCCTCCGGCCAGTACAACGCTGTCGACCACATTCTGTTGG
CCGGCGGCACGGCGTCGGTGCCCGGCCTCGACCGGCTGATCGAAGAGCGCCTGAACACCCCGACCCAGGTTGCCAACCCG
TTTTCCGACATGGCCTTGAGCAGCAAGGTCAACGCCGGGGCTTTGGCGAGCGATGCGCCGGCCCTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.65

100

0.557
  comM Acinetobacter nosocomialis M2

55.65

100

0.557
  comM Acinetobacter baylyi ADP1

53.672

100

0.537
  pilM Legionella pneumophila strain ERS1305867

49.577

100

0.497

Multiple sequence alignment