Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ASU2_RS05095 | Genome accession | NC_018690 |
| Coordinates | 1117903..1118340 (-) | Length | 145 a.a. |
| NCBI ID | WP_014991735.1 | Uniprot ID | - |
| Organism | Actinobacillus suis H91-0380 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1112903..1123340
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASU2_RS05070 (ASU2_05020) | yacG | 1113807..1113995 (-) | 189 | WP_005623139.1 | DNA gyrase inhibitor YacG | - |
| ASU2_RS05075 (ASU2_05025) | coaE | 1113977..1114615 (-) | 639 | WP_014991731.1 | dephospho-CoA kinase | - |
| ASU2_RS05080 (ASU2_05030) | pilD | 1114637..1115311 (-) | 675 | WP_014991732.1 | fimbrial protein | Machinery gene |
| ASU2_RS05085 (ASU2_05035) | pilC | 1115311..1116504 (-) | 1194 | WP_014991733.1 | type II secretion system F family protein | Machinery gene |
| ASU2_RS05090 (ASU2_05040) | pilB | 1116497..1117882 (-) | 1386 | WP_014991734.1 | GspE/PulE family protein | Machinery gene |
| ASU2_RS05095 (ASU2_05045) | pilA | 1117903..1118340 (-) | 438 | WP_014991735.1 | pilin | Machinery gene |
| ASU2_RS05100 (ASU2_05050) | radA | 1118520..1119899 (+) | 1380 | WP_014991736.1 | DNA repair protein RadA | Machinery gene |
| ASU2_RS05105 (ASU2_05055) | pepB | 1119965..1121248 (+) | 1284 | WP_014991737.1 | aminopeptidase PepB | - |
| ASU2_RS05110 (ASU2_05060) | - | 1121376..1122311 (+) | 936 | WP_014991738.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| ASU2_RS05115 (ASU2_05065) | greB | 1122321..1122809 (+) | 489 | WP_014991739.1 | transcription elongation factor GreB | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15395.62 Da Isoelectric Point: 7.6225
>NTDB_id=1467 ASU2_RS05095 WP_014991735.1 1117903..1118340(-) (pilA) [Actinobacillus suis H91-0380]
MKHIIKPIQQAFTLIELMIVIAIIAILATVAIPSYNNYTKKAALSELLAASSAYKTDVEICIYNTGATNSCFSGANGIKN
GDDLKNSKYLDSVSVTAGTITVNGKGSVAGYGYTLTPDYSSKTLTWKTTCSGEDKSLFPAAFCSE
MKHIIKPIQQAFTLIELMIVIAIIAILATVAIPSYNNYTKKAALSELLAASSAYKTDVEICIYNTGATNSCFSGANGIKN
GDDLKNSKYLDSVSVTAGTITVNGKGSVAGYGYTLTPDYSSKTLTWKTTCSGEDKSLFPAAFCSE
Nucleotide
Download Length: 438 bp
>NTDB_id=1467 ASU2_RS05095 WP_014991735.1 1117903..1118340(-) (pilA) [Actinobacillus suis H91-0380]
ATGAAACACATAATTAAACCGATACAACAGGCATTTACCCTGATTGAATTAATGATTGTGATTGCAATCATTGCAATTTT
AGCAACTGTGGCGATTCCTTCTTATAACAATTACACCAAAAAAGCGGCATTATCCGAACTGTTAGCGGCATCTTCTGCAT
ATAAAACGGATGTAGAAATTTGTATTTATAACACTGGAGCTACCAATAGCTGTTTTAGTGGAGCCAATGGCATTAAGAAT
GGCGATGATCTTAAAAATTCTAAGTATTTAGATTCAGTCTCTGTAACTGCCGGTACTATAACCGTGAATGGCAAGGGCAG
CGTAGCGGGATATGGTTATACACTTACACCGGATTATTCAAGTAAAACACTGACGTGGAAAACAACCTGTTCAGGAGAGG
ATAAAAGTTTATTCCCCGCAGCATTTTGCTCGGAATAA
ATGAAACACATAATTAAACCGATACAACAGGCATTTACCCTGATTGAATTAATGATTGTGATTGCAATCATTGCAATTTT
AGCAACTGTGGCGATTCCTTCTTATAACAATTACACCAAAAAAGCGGCATTATCCGAACTGTTAGCGGCATCTTCTGCAT
ATAAAACGGATGTAGAAATTTGTATTTATAACACTGGAGCTACCAATAGCTGTTTTAGTGGAGCCAATGGCATTAAGAAT
GGCGATGATCTTAAAAATTCTAAGTATTTAGATTCAGTCTCTGTAACTGCCGGTACTATAACCGTGAATGGCAAGGGCAG
CGTAGCGGGATATGGTTATACACTTACACCGGATTATTCAAGTAAAACACTGACGTGGAAAACAACCTGTTCAGGAGAGG
ATAAAAGTTTATTCCCCGCAGCATTTTGCTCGGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
60.274 |
100 |
0.607 |
| pilA | Haemophilus influenzae Rd KW20 |
56.738 |
97.241 |
0.552 |
| pilA | Haemophilus influenzae 86-028NP |
56.429 |
96.552 |
0.545 |
| comP | Acinetobacter baylyi ADP1 |
42.254 |
97.931 |
0.414 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.552 |
100 |
0.366 |