Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SpyM6D471_RS01370 Genome accession   NZ_CP011415
Coordinates   262663..263214 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D471     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 257663..268214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SpyM6D471_RS01370 (SpyM6D471_01365) comX/sigX/comX2/sigX2 262663..263214 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  SpyM6D471_RS01375 (SpyM6D471_01370) - 263773..264300 (+) 528 WP_021340513.1 YqeG family HAD IIIA-type phosphatase -
  SpyM6D471_RS01380 (SpyM6D471_01375) yqeH 264300..265418 (+) 1119 WP_011184178.1 ribosome biogenesis GTPase YqeH -
  SpyM6D471_RS01385 (SpyM6D471_01380) yhbY 265444..265752 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  SpyM6D471_RS01390 (SpyM6D471_01385) - 265821..266453 (+) 633 WP_011184179.1 nicotinate-nucleotide adenylyltransferase -
  SpyM6D471_RS01395 (SpyM6D471_01390) yqeK 266450..267043 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SpyM6D471_RS01400 (SpyM6D471_01395) rsfS 267067..267420 (+) 354 WP_011017339.1 ribosome silencing factor -
  SpyM6D471_RS01405 (SpyM6D471_01400) - 267468..268211 (+) 744 WP_014407307.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=145794 SpyM6D471_RS01370 WP_010921894.1 262663..263214(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain D471]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=145794 SpyM6D471_RS01370 WP_010921894.1 262663..263214(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain D471]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.