Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AAY24_RS11285 Genome accession   NZ_CP011412
Coordinates   2457425..2457700 (-) Length   91 a.a.
NCBI ID   WP_082117122.1    Uniprot ID   -
Organism   Sedimenticola thiotaurini strain SIP-G1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2452425..2462700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAY24_RS11275 (AAY24_11275) - 2455083..2456441 (-) 1359 WP_046861245.1 deoxyguanosinetriphosphate triphosphohydrolase -
  AAY24_RS11280 (AAY24_11280) - 2456644..2457306 (+) 663 WP_046859763.1 protein-L-isoaspartate O-methyltransferase family protein -
  AAY24_RS11285 (AAY24_11285) comEA 2457425..2457700 (-) 276 WP_082117122.1 ComEA family DNA-binding protein Machinery gene
  AAY24_RS11290 (AAY24_11290) waaA 2457837..2459102 (-) 1266 WP_046859764.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AAY24_RS11295 (AAY24_11295) - 2459261..2460913 (-) 1653 WP_335337168.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  AAY24_RS11300 (AAY24_11300) - 2461551..2462111 (-) 561 WP_046859766.1 sugar transferase -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 9628.07 Da        Isoelectric Point: 6.9459

>NTDB_id=145712 AAY24_RS11285 WP_082117122.1 2457425..2457700(-) (comEA) [Sedimenticola thiotaurini strain SIP-G1]
MMKCCQFIVATALLLASTVGFAGPVNINTASAEQIATELKGIGNAKAQAIVDYRTQHGAFKSADELVRVKGIGEKTIAAN
REYILIGDSDQ

Nucleotide


Download         Length: 276 bp        

>NTDB_id=145712 AAY24_RS11285 WP_082117122.1 2457425..2457700(-) (comEA) [Sedimenticola thiotaurini strain SIP-G1]
ATGATGAAATGCTGTCAATTTATCGTTGCAACTGCCCTGCTGCTGGCGTCCACGGTTGGCTTTGCCGGGCCGGTGAATAT
CAACACGGCATCGGCGGAGCAGATCGCCACTGAACTGAAAGGGATTGGCAATGCGAAAGCCCAGGCTATTGTGGATTATC
GGACCCAGCATGGTGCTTTCAAAAGTGCCGATGAGCTGGTCAGGGTCAAGGGGATTGGTGAAAAGACCATCGCGGCCAAT
CGGGAATATATCCTGATTGGTGATTCAGACCAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(22-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

53.846

100

0.538
  comEA Vibrio cholerae C6706

59.701

73.626

0.44
  comEA Vibrio cholerae strain A1552

59.701

73.626

0.44
  comEA Vibrio campbellii strain DS40M4

53.731

73.626

0.396
  comEA/celA/cilE Streptococcus pneumoniae R6

43.421

83.516

0.363
  comEA/celA/cilE Streptococcus pneumoniae Rx1

43.421

83.516

0.363
  comEA/celA/cilE Streptococcus pneumoniae D39

43.421

83.516

0.363
  comEA/comE1 Glaesserella parasuis strain SC1401

50.769

71.429

0.363

Multiple sequence alignment