Detailed information NTG0144464

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: YQ44_RS22895
• Genome accession: NZ_CP011319
• Coordinates: 5297678..5298817 (+)
• Length: 379 a.a.
• NCBI ID: WP_269466315.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. 1_2014MBL_MicDiv
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5292678..5303817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YQ44_RS22865 (YQ44_22890)	-	5293154..5293627 (+)	474	WP_232251323.1	DUF3455 domain-containing protein	-
YQ44_RS22870 (YQ44_22895)	-	5293720..5294286 (+)	567	WP_071325349.1	sigma-70 family RNA polymerase sigma factor	-
YQ44_RS22875 (YQ44_22900)	-	5294283..5295002 (+)	720	WP_071325350.1	anti-sigma factor	-
YQ44_RS22880 (YQ44_22905)	proC	5295010..5295840 (-)	831	WP_071325351.1	pyrroline-5-carboxylate reductase	-
YQ44_RS22885 (YQ44_22910)	-	5295859..5296560 (-)	702	WP_071325352.1	YggS family pyridoxal phosphate-dependent enzyme	-
YQ44_RS22890 (YQ44_22915)	pilT	5296631..5297674 (+)	1044	WP_071325353.1	type IV pilus twitching motility protein PilT	Machinery gene
YQ44_RS22895 (YQ44_22920)	pilU	5297678..5298817 (+)	1140	WP_269466315.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
YQ44_RS22900 (YQ44_22925)	-	5298819..5299304 (+)	486	WP_071325354.1	glutathione peroxidase	-
YQ44_RS22905 (YQ44_22930)	-	5299491..5301602 (+)	2112	WP_071325355.1	EAL domain-containing protein	-
YQ44_RS22910 (YQ44_22935)	glcF	5301595..5302824 (-)	1230	WP_071325356.1	glycolate oxidase subunit GlcF	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 41058.24 Da
• Isoelectric Point: 6.7814

>NTDB_id=144464 YQ44_RS22895 WP_269466315.1 5297678..5298817(+) (pilU) [Janthinobacterium sp. 1_2014MBL_MicDiv]
MQTTHEHYDAMHALLAQMRARGGSDLFITAGFPPAIKLDGKLTPLPGAPLDAAQAAGYVRAVMHARQAAEFAASREANFA
ISPDGLGRFRVSAFMQMGQAGMVLRTINTAIPTLDALGLPAILQDVVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWATALKNTLRQAPDVIQIGEIRDRDTMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPNKEGGGRQAALEILLNSPLMSDLIFKGQVHEIKELMKKSREL
GMQTFDQALFDLHEAGRIGYEDALRNADSVNDLRLTIKLNGNAAPEPAAAVGNLKLGLL

Nucleotide

• Length: 1140 bp

>NTDB_id=144464 YQ44_RS22895 WP_269466315.1 5297678..5298817(+) (pilU) [Janthinobacterium sp. 1_2014MBL_MicDiv]
ATGCAGACGACCCACGAACACTACGACGCCATGCACGCGCTGCTGGCGCAGATGCGCGCACGGGGCGGCTCCGACCTGTT
CATCACGGCCGGTTTTCCGCCCGCCATCAAGCTCGACGGCAAGCTGACGCCGCTGCCCGGCGCCCCGCTCGATGCGGCCC
AGGCTGCCGGCTACGTGCGCGCCGTCATGCACGCGCGCCAGGCGGCGGAGTTCGCGGCCAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGACGGCCTCGGGCGCTTCCGCGTGTCCGCCTTCATGCAGATGGGCCAGGCAGGCATGGTCTTGCGCACGAT
CAATACCGCCATCCCCACGCTGGATGCGCTGGGCCTGCCCGCCATCCTGCAGGACGTGGTGATGAGCAAGCGCGGCCTCG
TCATCATGGTGGGCGCCACCGGCTGCGGCAAGTCGACCACGCTGGCCGCCATGGTCGGCCACCGCAACGCCCACAGCCAC
GGCCACATCATCACCATCGAAGACCCTGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAAGTGGG
CGTCGACACGGACGACTGGGCCACGGCCCTGAAAAACACCCTGCGCCAGGCGCCCGACGTCATCCAGATCGGCGAAATCC
GCGACCGCGACACGATGGACCACGCCATCGCGTTTGCCGAGACGGGCCATTTGTGCCTGGCGACCCTGCACGCGAACAAC
GCCAACCAGGCGCTCGACCGCATCATCAATTTCTTCCCCGAGGAGCGCCGCCAGCAGTTGCTGATGGACCTGTCGCTGAA
TCTGAAGGGCATGATTTCGCAGCGCCTGATCCCCAACAAGGAGGGCGGCGGACGCCAAGCGGCGCTGGAAATCCTGCTCA
ATTCACCGTTGATGAGCGACCTGATCTTCAAGGGCCAGGTGCACGAAATCAAGGAATTGATGAAAAAATCGCGCGAACTG
GGCATGCAGACCTTCGATCAGGCCCTGTTCGACCTGCACGAGGCGGGACGGATCGGCTACGAAGACGCGCTGCGCAATGC
CGATTCCGTCAACGACCTGCGCCTGACGATCAAACTGAACGGCAATGCGGCGCCGGAACCGGCCGCAGCCGTGGGCAACC
TCAAACTGGGACTCCTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (39-278)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	62.57	94.459	0.591
pilU	Acinetobacter baylyi ADP1	59.259	92.612	0.549
pilU	Vibrio cholerae strain A1552	56.598	89.974	0.509
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.813	86.28	0.369
pilT	Pseudomonas aeruginosa PAK	41.018	88.127	0.361