Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TP37_RS05405 Genome accession   NZ_CP011160
Coordinates   1219808..1221064 (-) Length   418 a.a.
NCBI ID   WP_007973903.1    Uniprot ID   A0AB34Q195
Organism   Xanthomonas citri pv. aurantifolii strain FDC 1559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1214808..1226064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TP37_RS24305 - 1214937..1215509 (-) 573 WP_197730841.1 hypothetical protein -
  TP37_RS05385 (TP37_05280) - 1215585..1216547 (+) 963 WP_007969091.1 IS1595 family transposase -
  TP37_RS24915 - 1216538..1217818 (-) 1281 WP_197730847.1 RHS repeat protein -
  TP37_RS05395 (TP37_05290) coaE 1218313..1218924 (-) 612 WP_007973907.1 dephospho-CoA kinase -
  TP37_RS05400 (TP37_05295) - 1218938..1219801 (-) 864 WP_003491180.1 A24 family peptidase -
  TP37_RS05405 (TP37_05300) pilC 1219808..1221064 (-) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  TP37_RS05410 (TP37_05305) pilE 1221391..1221831 (+) 441 WP_005934296.1 pilin Machinery gene
  TP37_RS05415 (TP37_05310) - 1221940..1222341 (+) 402 WP_046121195.1 pilin -
  TP37_RS05420 (TP37_05315) pilB 1222404..1224140 (+) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TP37_RS05425 - 1224237..1224383 (+) 147 WP_082336538.1 serine/threonine protein kinase -
  TP37_RS05430 (TP37_05320) pilR 1224590..1226044 (-) 1455 WP_042806014.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45939.35 Da        Isoelectric Point: 10.3003

>NTDB_id=143033 TP37_RS05405 WP_007973903.1 1219808..1221064(-) (pilC) [Xanthomonas citri pv. aurantifolii strain FDC 1559]
MSVARSSIKKQPVDRNVSEMIPFVWEGTDKRGVKMKGEQQARNANMLRAELRRQGITPTVVKTKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQIRADIEGGSSLYEAISRHPVQFDDLYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWF
MLLASVAAIAGFIFAYKRSPRMRHGMDRLVLKFPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGSVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=143033 TP37_RS05405 WP_007973903.1 1219808..1221064(-) (pilC) [Xanthomonas citri pv. aurantifolii strain FDC 1559]
ATGTCAGTCGCTCGCAGCAGCATCAAGAAGCAACCGGTAGACCGAAATGTCAGTGAAATGATCCCGTTTGTCTGGGAAGG
CACAGACAAGCGTGGCGTCAAGATGAAGGGGGAGCAGCAGGCCCGCAATGCAAACATGCTGCGTGCAGAGCTTCGTCGCC
AGGGAATCACTCCTACAGTTGTAAAGACTAAACCAAAACCGCTTTTTGGCGCTGCGGGCAAAAAGATTTCACCAAAAGAC
ATCGCATTCTTCAGCCGCCAGATGGCAACGATGATGAAGTCCGGAGTTCCCATAGTTGGCGCACTTGAAATTATCGGCGA
AGGGCACAAAAACCCTCGCATGAAAAAGATGGTTGGTCAGATTCGAGCTGATATCGAAGGAGGTTCTTCACTTTACGAAG
CTATTTCTCGACATCCAGTCCAGTTTGACGACTTGTATCGAAATCTGGTGCGCGCGGGCGAGGGTGCTGGCGTCTTGGAA
ACTGTCCTAGATACAGTTGCGAACTATAAAGAAAATATTGAGGCCCTTAAGGGCAAAATCAAAAAAGCCCTGTTTTATCC
TGCCATGGTAATGGCCGTCGCAATTATTGTTAGCGGCATACTATTAGTTTTCGTGGTCCCTCAATTTGAAGATGTATTCA
AAGGTTTTGGAGCAGAACTTCCCGCTTTTACGCAAATGATTGTAGCAGCATCTCGTTTCATGGTGTCTTATTGGTGGTTC
ATGCTACTAGCAAGTGTCGCAGCGATAGCTGGCTTCATCTTTGCCTACAAACGCTCACCGCGCATGCGCCACGGAATGGA
CAGGCTTGTTTTGAAGTTTCCAGTGATCGGGCAGATTATGCACAATAGCTCGATTGCTCGATTTGCCCGAACCACCGCGG
TCACGTTTAAAGCTGGCGTACCCCTTGTAGAAGCCCTAAGTATTGTTGCCGGTGCGACTGGCAATAAGGTATATGAGGAA
GCTGTGCTGCGGATGCGCGACGACGTCTCTGTAGGATACCCCGTGAACATGGCCATGAAGCAAGTAAACCTGTTCCCGCA
TATGGTGATTCAAATGACATCCATTGGCGAGGAAGCGGGCGCACTTGATGCAATGCTATTCAAAGTCGCGGAGTATTTCG
AGCAGGAAGTAAATAATGCCGTGGATGCGCTAAGCAGCCTATTGGAGCCGTTGATCATGGTATTCATCGGTACAATTGTT
GGCGGCATGGTGATCGGCATGTATCTTCCGATTTTCAAACTTGGCTCGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

53.102

96.411

0.512
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.737

0.505
  pilC Acinetobacter baumannii D1279779

52.109

96.411

0.502
  pilC Legionella pneumophila strain ERS1305867

51.478

97.129

0.5
  pilG Neisseria gonorrhoeae MS11

45.5

95.694

0.435
  pilG Neisseria meningitidis 44/76-A

45

95.694

0.431
  pilC Vibrio cholerae strain A1552

42.677

94.737

0.404
  pilC Vibrio campbellii strain DS40M4

39.646

94.737

0.376
  pilC Thermus thermophilus HB27

37.94

95.215

0.361

Multiple sequence alignment