Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   SCVFeb_RS26535 Genome accession   NZ_CP013477
Coordinates   5624714..5625238 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain SCVFeb     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5619714..5630238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCVFeb_RS26520 (SCVFeb_5236) aroB 5620842..5621948 (-) 1107 WP_004347587.1 3-dehydroquinate synthase -
  SCVFeb_RS26525 (SCVFeb_5237) aroK 5621998..5622516 (-) 519 WP_003095833.1 shikimate kinase AroK -
  SCVFeb_RS26530 (SCVFeb_5238) pilQ 5622528..5624660 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  SCVFeb_RS26535 (SCVFeb_5239) comL/pilP 5624714..5625238 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  SCVFeb_RS26540 (SCVFeb_5240) pilO 5625235..5625858 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  SCVFeb_RS26545 (SCVFeb_5241) pilN 5625855..5626451 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  SCVFeb_RS26550 (SCVFeb_5242) pilM 5626451..5627515 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  SCVFeb_RS26555 (SCVFeb_5243) - 5627700..5630168 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=140846 SCVFeb_RS26535 WP_003095836.1 5624714..5625238(-) (comL/pilP) [Pseudomonas aeruginosa strain SCVFeb]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=140846 SCVFeb_RS26535 WP_003095836.1 5624714..5625238(-) (comL/pilP) [Pseudomonas aeruginosa strain SCVFeb]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment