Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HR49_RS18090 Genome accession   NZ_CP010820
Coordinates   3637702..3638961 (-) Length   419 a.a.
NCBI ID   WP_036124110.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain RB-21     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3632702..3643961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR49_RS18070 (HR49_18080) - 3633486..3634256 (-) 771 WP_235318481.1 tyrosine-protein phosphatase -
  HR49_RS18075 (HR49_18085) rny 3634397..3635956 (-) 1560 WP_008178918.1 ribonuclease Y -
  HR49_RS18085 (HR49_18095) recA 3636479..3637540 (-) 1062 WP_036124113.1 recombinase RecA Machinery gene
  HR49_RS18090 (HR49_18100) cinA 3637702..3638961 (-) 1260 WP_036124110.1 competence/damage-inducible protein A Machinery gene
  HR49_RS18095 (HR49_18105) pgsA 3638979..3639557 (-) 579 WP_025113992.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HR49_RS18100 (HR49_18110) - 3639605..3640534 (-) 930 WP_200886567.1 helix-turn-helix domain-containing protein -
  HR49_RS18105 (HR49_18115) - 3640551..3641336 (-) 786 WP_008178931.1 DUF3388 domain-containing protein -
  HR49_RS18110 (HR49_18120) - 3641563..3641820 (-) 258 WP_008178933.1 DUF3243 domain-containing protein -
  HR49_RS18115 (HR49_18125) ymfI 3641865..3642593 (-) 729 WP_036124104.1 elongation factor P 5-aminopentanone reductase -
  HR49_RS18120 (HR49_18130) yfmH 3642593..3643891 (-) 1299 WP_036124101.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45412.67 Da        Isoelectric Point: 4.8263

>NTDB_id=140077 HR49_RS18090 WP_036124110.1 3637702..3638961(-) (cinA) [Lysinibacillus fusiformis strain RB-21]
MNAEILAVGSELLLGQITNTNARFISNQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFANRGRPMTENNRKQALILAGSEILANHHGMAPGMIFKNNNRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQDILDAQTNPTVAPLASDGEVTLRVTAKAETEQQAQQLIAAKV
AEIQTLVGDYQYGVDDDSLVSKTVEMLVDNNLTISAAESLTAGLFQSELAEIPGVGNALIGGVVTYAAEAKVKHLGISQE
LIDTHGVVSGECAAAMASAIRKQFGTNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQRLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=140077 HR49_RS18090 WP_036124110.1 3637702..3638961(-) (cinA) [Lysinibacillus fusiformis strain RB-21]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAGCTATTATTAGGTCAAATTACGAATACGAATGCGAGATTTATCTCGAA
CCAGTTATCCGAGCTAGGCATTAATGTTTTTTACCATACAGTAGTTGGTGATAACGCAAAACGTTTAGAACAAGCTATTG
AAGTGGCAGAATCTCGTGCAGATTTAATTATATTTTCGGGAGGACTAGGACCTACGAAAGATGATTTAACAAAAGAAACG
ATTGCTCGCCATCTCGGTGTTTCTCTAGAATTTGATGAAGTTGCATTAACATATATTGAGCAGTTTTTTGCCAACCGAGG
ACGTCCTATGACGGAGAATAACCGGAAACAGGCTTTAATTCTAGCTGGAAGCGAAATATTAGCCAATCATCACGGAATGG
CGCCGGGTATGATTTTTAAAAACAATAATCGTACGTATATTTTACTCCCAGGGCCACCAAAAGAGCTTGAGCCTATGTTT
CAATTTGAGGCGAAACCTAAGCTTGCCGCGATGCTTAATGATGGAGGGATCATTGCCTCTCATGTGATGCGTTTTTATGG
GATTGGTGAGGCCGAACTTGAAGTCCAGGTACAGGATATTTTAGATGCCCAAACAAATCCAACTGTCGCTCCACTTGCGT
CGGATGGTGAGGTAACATTACGCGTAACAGCTAAAGCAGAAACCGAACAGCAAGCCCAACAACTTATTGCCGCCAAAGTA
GCAGAGATACAAACCCTTGTTGGTGACTATCAATATGGTGTGGATGATGACTCACTTGTTTCAAAGACAGTTGAAATGCT
AGTTGACAATAATCTAACTATTTCTGCTGCGGAAAGTTTAACGGCAGGGTTGTTTCAATCAGAGCTTGCGGAAATTCCAG
GGGTAGGTAACGCACTCATTGGAGGCGTAGTGACCTATGCGGCAGAAGCAAAAGTAAAGCATCTTGGTATTTCACAAGAA
TTAATAGATACACACGGTGTTGTAAGCGGTGAATGTGCTGCTGCAATGGCAAGTGCAATTCGAAAACAATTTGGGACAAA
TATCGGCATTGGGTTAACAGGAGAAGCAGGGCCTACAGCACATGACCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATCAACGATGAGGAGCCACTTACATACTTACTTCATTTATCTGGTATGCGTAATACAAATCGACTCCGTGCAGTGAAA
TTTACATGCCATTATTTAATGCAGCGTTTGGAAGAACGCGGCTATACAAAACGATATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

45.431

91.408

0.415
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.648

91.408

0.408
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mutans UA159

44.18

90.215

0.399

Multiple sequence alignment