Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | ATC05_RS16360 | Genome accession | NZ_CP013245 |
| Coordinates | 3538524..3538988 (+) | Length | 154 a.a. |
| NCBI ID | WP_003455732.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain VA-134 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3533524..3543988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATC05_RS16335 (ATC05_16325) | yacG | 3533694..3533894 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| ATC05_RS16340 (ATC05_16330) | coaE | 3533891..3534502 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| ATC05_RS16345 (ATC05_16335) | pilD | 3534499..3535371 (-) | 873 | WP_003455739.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| ATC05_RS16350 (ATC05_16340) | pilC | 3535372..3536589 (-) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| ATC05_RS16355 (ATC05_16345) | pilB | 3536593..3538293 (-) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ATC05_RS16360 (ATC05_16350) | pilA/pilAI | 3538524..3538988 (+) | 465 | WP_003455732.1 | pilin | Machinery gene |
| ATC05_RS16365 (ATC05_16355) | - | 3539146..3540459 (+) | 1314 | WP_223818287.1 | O-antigen ligase family protein | - |
| ATC05_RS16375 (ATC05_16365) | nadC | 3540640..3541488 (-) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16118.44 Da Isoelectric Point: 8.9986
>NTDB_id=139817 ATC05_RS16360 WP_003455732.1 3538524..3538988(+) (pilA/pilAI) [Pseudomonas aeruginosa strain VA-134]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTR
STLLTGDGKGQIKIDKADTATPEISGTLGGSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTR
STLLTGDGKGQIKIDKADTATPEISGTLGGSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=139817 ATC05_RS16360 WP_003455732.1 3538524..3538988(+) (pilA/pilAI) [Pseudomonas aeruginosa strain VA-134]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCCGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCGGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCCGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCGGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.161 |
100 |
0.455 |
| pilA | Pseudomonas aeruginosa PAK |
41.772 |
100 |
0.429 |
| pilA | Acinetobacter baumannii strain A118 |
45.07 |
92.208 |
0.416 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
35.882 |
100 |
0.396 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.735 |
98.052 |
0.39 |
| pilA | Vibrio cholerae C6706 |
39.735 |
98.052 |
0.39 |
| pilA | Vibrio cholerae strain A1552 |
39.735 |
98.052 |
0.39 |