Detailed information NTG0139000

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: SC10_RS19425
• Genome accession: NZ_CP010524
• Coordinates: 3911405..3911977 (-)
• Length: 190 a.a.
• NCBI ID: WP_025810658.1
• Uniprot ID: A0A6I7TPT5
• Organism: Bacillus paralicheniformis strain BL-09
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3906405..3916977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SC10_RS19400 (SC10_B2orf05862)	-	3906745..3907152 (-)	408	WP_035337869.1	CBS domain-containing protein	-
SC10_RS19405 (SC10_B2orf05863)	-	3907213..3908169 (-)	957	WP_023857119.1	magnesium transporter CorA family protein	-
SC10_RS19410 (SC10_B2orf05864)	-	3908330..3909628 (+)	1299	WP_023857118.1	hemolysin family protein	-
SC10_RS19415 (SC10_B2orf05867)	-	3909777..3910988 (+)	1212	WP_023857117.1	ammonium transporter	-
SC10_RS19420 (SC10_B2orf05868)	-	3911007..3911357 (+)	351	WP_039073055.1	P-II family nitrogen regulator	-
SC10_RS19425 (SC10_B2orf05869)	clpP	3911405..3911977 (-)	573	WP_025810658.1	ATP-dependent Clp protease proteolytic subunit	Regulator
SC10_RS19430 (SC10_B2orf05870)	-	3911991..3912596 (-)	606	WP_020453224.1	RNA polymerase sigma factor	-
SC10_RS19435 (SC10_B2orf05872)	-	3912732..3913607 (-)	876	WP_020453225.1	M23 family metallopeptidase	-
SC10_RS19440 (SC10_B2orf05876)	-	3913801..3914298 (+)	498	WP_023857112.1	GNAT family N-acetyltransferase	-
SC10_RS19445 (SC10_B2orf05877)	-	3914349..3914792 (-)	444	WP_025810657.1	YwnF family protein	-
SC10_RS19450 (SC10_B2orf05878)	cls	3915040..3916488 (+)	1449	WP_025810656.1	cardiolipin synthase	-

Sequence

Protein

• Length: 190 a.a.
• Molecular weight: 21088.23 Da
• Isoelectric Point: 5.3555

>NTDB_id=139000 SC10_RS19425 WP_025810658.1 3911405..3911977(-) (clpP) [Bacillus paralicheniformis strain BL-09]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVKPDVRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIEHFFHERTGQ
PIERLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide

• Length: 573 bp

>NTDB_id=139000 SC10_RS19425 WP_025810658.1 3911405..3911977(-) (clpP) [Bacillus paralicheniformis strain BL-09]
ATGAACACCATACCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGCTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAGTTGCTGTTTTTGTCAGCCG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCGATTTTGGATACG
ATGGACTATGTGAAGCCGGATGTCCGCACGATCTGCGTCGGAATGGCAGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG
AACAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCACTTTTTTCACGAACGAACGGGCCAG
CCCATTGAAAGACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTGATTGA
CGCCGTTTTATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-190)

3D structure

• AlphaFold DB: A0A6I7TPT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	65.263	100	0.653
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	61.497	98.421	0.605
clpP	Streptococcus thermophilus LMG 18311	55.556	99.474	0.553
clpP	Streptococcus thermophilus LMD-9	55.556	99.474	0.553
clpP	Streptococcus pyogenes MGAS315	55.026	99.474	0.547
clpP	Streptococcus pyogenes JRS4	55.026	99.474	0.547
clpP	Streptococcus pneumoniae D39	54.497	99.474	0.542
clpP	Streptococcus mutans UA159	54.497	99.474	0.542
clpP	Streptococcus pneumoniae Rx1	54.497	99.474	0.542
clpP	Streptococcus pneumoniae R6	54.497	99.474	0.542
clpP	Streptococcus pneumoniae TIGR4	54.497	99.474	0.542
clpP	Lactococcus lactis subsp. cremoris KW2	52.91	99.474	0.526
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	99.474	0.516