Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NZ30_RS06005 Genome accession   NZ_CP009750
Coordinates   1353888..1355147 (-) Length   419 a.a.
NCBI ID   WP_108084727.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain ICMP11055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348888..1360147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZ30_RS05980 - 1349939..1350154 (+) 216 WP_003466408.1 hypothetical protein -
  NZ30_RS05985 (NZ30_05835) - 1350253..1350930 (+) 678 WP_003466405.1 response regulator transcription factor -
  NZ30_RS05990 (NZ30_05840) - 1350923..1352257 (+) 1335 WP_003477107.1 HAMP domain-containing sensor histidine kinase -
  NZ30_RS05995 (NZ30_05845) coaE 1352384..1353004 (-) 621 WP_003466399.1 dephospho-CoA kinase -
  NZ30_RS06000 (NZ30_05850) - 1353018..1353881 (-) 864 WP_003466396.1 prepilin peptidase -
  NZ30_RS06005 (NZ30_05855) pilC 1353888..1355147 (-) 1260 WP_108084727.1 type II secretion system F family protein Machinery gene
  NZ30_RS06010 (NZ30_05860) - 1355528..1355962 (+) 435 WP_081045858.1 pilin -
  NZ30_RS21535 - 1356208..1356420 (-) 213 WP_230939645.1 hypothetical protein -
  NZ30_RS06020 (NZ30_05865) pilB 1356702..1358438 (+) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NZ30_RS06025 (NZ30_05870) - 1358613..1359065 (-) 453 WP_230811680.1 Fic family protein -
  NZ30_RS06030 (NZ30_05875) - 1359062..1359244 (-) 183 WP_003466380.1 YhfG family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45421.58 Da        Isoelectric Point: 10.1709

>NTDB_id=131843 NZ30_RS06005 WP_108084727.1 1353888..1355147(-) (pilC) [Xanthomonas translucens pv. undulosa strain ICMP11055]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISTKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMGVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWLL
LLIVLVGSIVGFIFAYKRSPSMQHGMDKLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=131843 NZ30_RS06005 WP_108084727.1 1353888..1355147(-) (pilC) [Xanthomonas translucens pv. undulosa strain ICMP11055]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGTACCAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGGTGTGGCGCTGCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCAGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTTGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCATCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CAAGTTGATTCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTACTGCGCATGCGTGACGATGTCTCGGTGGGCTACCCGGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCTTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Legionella pneumophila strain ERS1305867

51.485

96.42

0.496
  pilC Acinetobacter baumannii D1279779

50.735

97.375

0.494
  pilC Acinetobacter baylyi ADP1

50.49

97.375

0.492
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria gonorrhoeae MS11

42.462

94.988

0.403
  pilG Neisseria meningitidis 44/76-A

41.855

95.227

0.399
  pilC Vibrio campbellii strain DS40M4

39.798

94.749

0.377

Multiple sequence alignment