Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BF29_RS10955 Genome accession   NZ_CP009709
Coordinates   2184118..2184618 (-) Length   166 a.a.
NCBI ID   WP_017554535.1    Uniprot ID   A0A150KHY2
Organism   Heyndrickxia coagulans DSM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2179118..2189618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF29_RS10935 (BF29_2246) rplI 2180286..2180729 (-) 444 WP_013860880.1 50S ribosomal protein L9 -
  BF29_RS10940 (BF29_2247) - 2180726..2182699 (-) 1974 WP_029142100.1 DHH family phosphoesterase -
  BF29_RS10945 (BF29_2248) - 2182735..2183676 (-) 942 WP_142236791.1 YybS family protein -
  BF29_RS10950 (BF29_2249) rpsR 2183834..2184073 (-) 240 WP_013860883.1 30S ribosomal protein S18 -
  BF29_RS10955 (BF29_2250) ssbA 2184118..2184618 (-) 501 WP_017554535.1 single-stranded DNA-binding protein Machinery gene
  BF29_RS10960 (BF29_2251) rpsF 2184680..2184967 (-) 288 WP_013860885.1 30S ribosomal protein S6 -
  BF29_RS10965 (BF29_2252) ribE 2185226..2185696 (-) 471 WP_019720267.1 6,7-dimethyl-8-ribityllumazine synthase -
  BF29_RS10970 (BF29_2253) - 2185709..2186902 (-) 1194 WP_029142102.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  BF29_RS10975 (BF29_2254) - 2186920..2187567 (-) 648 WP_013860888.1 riboflavin synthase -
  BF29_RS10980 (BF29_2255) ribD 2187548..2188660 (-) 1113 WP_029142103.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18713.39 Da        Isoelectric Point: 4.6529

>NTDB_id=131493 BF29_RS10955 WP_017554535.1 2184118..2184618(-) (ssbA) [Heyndrickxia coagulans DSM]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVVAESVQFLEPRSANQERSSSQNYGNNQGNAFPGYNQDQNQNQRNQSYSKPDEDPFSNDGQPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=131493 BF29_RS10955 WP_017554535.1 2184118..2184618(-) (ssbA) [Heyndrickxia coagulans DSM]
ATGTTGAACCGTGTTGTTCTCGTAGGCAGGCTGACAAAAGATCCCGATTTGCGCTATACGCCGAGCGGAGTAGCGGTTGC
TACTTTTACCCTGGCTGTAAACCGTACGTTTACCAACCAGCAGGGGGAAAGGGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAACAGGCTGAAAATGTGGCCAACTACTTGAAAAAAGGAAGTCTGGCAGGCGTAGACGGCCGGATTCAGACACGC
AACTACGAAGCCCAGGATGGCCGGCGCGTGTATGTCACAGAGGTCGTGGCAGAAAGCGTCCAGTTTCTTGAACCGAGAAG
CGCGAATCAGGAACGCAGCAGCAGCCAGAATTACGGGAACAACCAAGGGAATGCTTTCCCGGGGTACAACCAGGATCAAA
ACCAGAATCAGCGCAATCAAAGTTATTCAAAGCCGGATGAAGATCCGTTCTCAAATGATGGACAACCAATTGACATCTCT
GATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150KHY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.455

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

63.855

0.416
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373
  ssb Neisseria meningitidis MC58

34.857

100

0.367
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.361
  ssb Vibrio cholerae strain A1552

33.333

100

0.361

Multiple sequence alignment