Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BG07_RS15995 Genome accession   NZ_CP009651
Coordinates   2777044..2777625 (-) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus pseudomycoides strain BTZ     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2772044..2782625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS15970 (BG07_2732) - 2772213..2772920 (+) 708 WP_018783324.1 class I SAM-dependent methyltransferase -
  BG07_RS15975 (BG07_2733) - 2773084..2774319 (+) 1236 WP_018783325.1 FprA family A-type flavoprotein -
  BG07_RS15980 (BG07_2734) - 2774341..2775561 (+) 1221 WP_018783326.1 NAD(P)/FAD-dependent oxidoreductase -
  BG07_RS15985 (BG07_2735) rd 2775588..2775752 (+) 165 WP_018783327.1 rubredoxin -
  BG07_RS15990 (BG07_2736) - 2776007..2776717 (+) 711 WP_018783328.1 Crp/Fnr family transcriptional regulator -
  BG07_RS15995 (BG07_2737) clpP 2777044..2777625 (-) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  BG07_RS16000 (BG07_2738) - 2777876..2778751 (-) 876 WP_003201914.1 DUF421 domain-containing protein -
  BG07_RS16005 (BG07_2739) - 2778772..2778978 (-) 207 WP_018783329.1 DUF1657 domain-containing protein -
  BG07_RS16010 (BG07_2740) spoVAE 2778990..2779340 (-) 351 WP_016112492.1 stage V sporulation protein AE -
  BG07_RS16015 (BG07_2741) spoVAD 2779337..2780353 (-) 1017 WP_003201920.1 stage V sporulation protein AD -
  BG07_RS16020 (BG07_2742) spoVAC 2780354..2780830 (-) 477 WP_003201921.1 stage V sporulation protein AC -
  BG07_RS16025 (BG07_2743) - 2780865..2781353 (-) 489 WP_018765091.1 YhcN/YlaJ family sporulation lipoprotein -
  BG07_RS16030 (BG07_2744) - 2781469..2781675 (-) 207 WP_003201925.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=130993 BG07_RS15995 WP_001049163.1 2777044..2777625(-) (clpP) [Bacillus pseudomycoides strain BTZ]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=130993 BG07_RS15995 WP_001049163.1 2777044..2777625(-) (clpP) [Bacillus pseudomycoides strain BTZ]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGCGCAATTGATGACAACGTAGCAAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AGGATCCAGAAAAAGATATTCACATCTACATCAACAGTCCTGGCGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATTTGTATCGGTATGGCAGCATCTATGGGTGCTTTCCTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAATTAAACCAAATTCTTGCTGATCGCACAGGTCAA
CCATTAGAAGTTCTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAGAGCACTAGAATACGGCTTAATCGA
TAAAATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554

Multiple sequence alignment