Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AK40_RS10760 Genome accession   NZ_CP009641
Coordinates   1334565..1335146 (-) Length   193 a.a.
NCBI ID   WP_001100890.1    Uniprot ID   A0AAN0W6G9
Organism   Bacillus cereus 03BB108     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1332285..1344863 1334565..1335146 within 0


Gene organization within MGE regions


Location: 1332285..1344863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK40_RS10750 (AK40_1388) - 1332285..1333490 (-) 1206 WP_000370609.1 quaternary amine ABC transporter ATP-binding protein -
  AK40_RS10755 (AK40_1389) - 1333662..1334519 (+) 858 WP_001227634.1 glycine betaine ABC transporter substrate-binding protein -
  AK40_RS10760 (AK40_1390) clpP 1334565..1335146 (-) 582 WP_001100890.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AK40_RS10765 (AK40_1391) - 1335168..1335854 (-) 687 WP_000337493.1 RNA polymerase subunit sigma-70 -
  AK40_RS10770 (AK40_1392) - 1335998..1336318 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  AK40_RS10775 (AK40_1393) rpiA 1336323..1336985 (+) 663 WP_000364536.1 ribose 5-phosphate isomerase A -
  AK40_RS10780 (AK40_1394) - 1337093..1337527 (+) 435 WP_000555725.1 GNAT family N-acetyltransferase -
  AK40_RS10785 (AK40_1395) - 1337658..1339025 (-) 1368 WP_001065246.1 lytic polysaccharide monooxygenase -
  AK40_RS10790 (AK40_1396) - 1339463..1339981 (-) 519 WP_000720567.1 DNA topology modulation protein -
  AK40_RS34185 - 1339978..1340157 (-) 180 Protein_1403 aminoglycoside phosphotransferase -
  AK40_RS10795 (AK40_1397) - 1340191..1340577 (-) 387 WP_001093444.1 DUF2809 domain-containing protein -
  AK40_RS10800 (AK40_1398) - 1340643..1341350 (-) 708 WP_000655496.1 class I SAM-dependent methyltransferase -
  AK40_RS10805 (AK40_1399) - 1341372..1341725 (-) 354 WP_000994639.1 MmcQ/YjbR family DNA-binding protein -
  AK40_RS10810 (AK40_1400) - 1341739..1342143 (-) 405 WP_000288934.1 GNAT family N-acetyltransferase -
  AK40_RS10815 (AK40_1401) - 1342391..1343776 (+) 1386 WP_000714659.1 S-layer homology domain-containing protein -
  AK40_RS10820 (AK40_1402) - 1343779..1343991 (+) 213 WP_000820167.1 DUF3006 domain-containing protein -
  AK40_RS10825 (AK40_1403) - 1344057..1344863 (-) 807 WP_000540634.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21206.47 Da        Isoelectric Point: 5.0776

>NTDB_id=130884 AK40_RS10760 WP_001100890.1 1334565..1335146(-) (clpP) [Bacillus cereus 03BB108]
MNVIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=130884 AK40_RS10760 WP_001100890.1 1334565..1335146(-) (clpP) [Bacillus cereus 03BB108]
ATGAATGTAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.404

100

0.544
  clpP Streptococcus pneumoniae Rx1

54.404

100

0.544
  clpP Streptococcus thermophilus LMG 18311

54.404

100

0.544
  clpP Streptococcus pneumoniae D39

54.404

100

0.544
  clpP Streptococcus pneumoniae R6

54.404

100

0.544
  clpP Streptococcus pneumoniae TIGR4

54.404

100

0.544
  clpP Streptococcus pyogenes MGAS315

55.263

98.446

0.544
  clpP Streptococcus pyogenes JRS4

55.263

98.446

0.544
  clpP Streptococcus mutans UA159

52.88

98.964

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.579

98.446

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.474

98.446

0.487

Multiple sequence alignment