Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   HKU360_RS01460 Genome accession   NZ_CP009612
Coordinates   276897..277448 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain HKU360     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 271897..282448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKU360_RS01460 (HKU360_00299) comX/sigX/comX2/sigX2 276897..277448 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  HKU360_RS01465 (HKU360_00300) - 278007..278534 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  HKU360_RS01470 (HKU360_00301) yqeH 278534..279652 (+) 1119 WP_002991096.1 ribosome biogenesis GTPase YqeH -
  HKU360_RS01475 (HKU360_00302) yhbY 279677..279985 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  HKU360_RS01480 (HKU360_00303) - 280054..280686 (+) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  HKU360_RS01485 (HKU360_00304) yqeK 280683..281276 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  HKU360_RS01490 (HKU360_00305) rsfS 281300..281653 (+) 354 WP_002991088.1 ribosome silencing factor -
  HKU360_RS01495 (HKU360_00306) - 281701..282444 (+) 744 WP_002991085.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=130724 HKU360_RS01460 WP_010921894.1 276897..277448(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain HKU360]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=130724 HKU360_RS01460 WP_010921894.1 276897..277448(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain HKU360]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGATGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.