Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpP   Type   Regulator
Locus tag   BF26_RS01585 Genome accession   NZ_CP009476
Coordinates   196939..197520 (+) Length   193 a.a.
NCBI ID   WP_033649167.1    Uniprot ID   -
Organism   Bacillus anthracis strain Pasteur     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 191939..202520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF26_RS01555 (BF26_216) - 192158..192676 (+) 519 WP_000720568.1 DNA topology modulation protein -
  BF26_RS01560 (BF26_217) - 193114..194481 (+) 1368 WP_001065250.1 lytic polysaccharide monooxygenase -
  BF26_RS01565 (BF26_218) - 194612..195046 (-) 435 WP_000555717.1 GNAT family N-acetyltransferase -
  BF26_RS01570 (BF26_219) rpiA 195154..195816 (-) 663 WP_000364536.1 ribose 5-phosphate isomerase A -
  BF26_RS01575 (BF26_220) - 195821..196087 (-) 267 WP_001125370.1 2Fe-2S iron-sulfur cluster-binding protein -
  BF26_RS01580 (BF26_221) - 196231..196917 (+) 687 WP_000337487.1 RNA polymerase subunit sigma-70 -
  BF26_RS01585 (BF26_222) clpP 196939..197520 (+) 582 WP_033649167.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  BF26_RS01590 (BF26_223) - 197566..198423 (-) 858 WP_001227634.1 glycine betaine ABC transporter substrate-binding protein -
  BF26_RS01595 (BF26_224) - 198595..199800 (+) 1206 WP_000370609.1 quaternary amine ABC transporter ATP-binding protein -
  BF26_RS01600 (BF26_225) - 199793..200629 (+) 837 WP_001084757.1 ABC transporter permease -
  BF26_RS01610 (BF26_226) - 201106..201273 (+) 168 WP_000508407.1 hypothetical protein -
  BF26_RS01615 (BF26_227) - 201388..202212 (+) 825 WP_000557567.1 PP2C family serine/threonine-protein phosphatase -

Sequence


Protein


Download         Length: 193 a.a.        Molecular weight: 21177.48 Da        Isoelectric Point: 5.7430

>NTDB_id=129687 BF26_RS01585 WP_033649167.1 196939..197520(+) (clpP) [Bacillus anthracis strain Pasteur]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEKAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=129687 BF26_RS01585 WP_033649167.1 196939..197520(+) (clpP) [Bacillus anthracis strain Pasteur]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGTTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTAGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAAAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains


Predicted by InterproScan.

(14-192)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668

  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.138

97.927

0.648

  clpP Streptococcus thermophilus LMD-9

54.167

99.482

0.539

  clpP Streptococcus pneumoniae Rx1

54.167

99.482

0.539

  clpP Streptococcus thermophilus LMG 18311

54.167

99.482

0.539

  clpP Streptococcus pneumoniae D39

54.167

99.482

0.539

  clpP Streptococcus pneumoniae R6

54.167

99.482

0.539

  clpP Streptococcus pneumoniae TIGR4

54.167

99.482

0.539

  clpP Streptococcus pyogenes MGAS315

55.026

97.927

0.539

  clpP Streptococcus pyogenes JRS4

55.026

97.927

0.539

  clpP Streptococcus mutans UA159

52.91

97.927

0.518

  clpP Lactococcus lactis subsp. cremoris KW2

51.323

97.927

0.503

  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.206

97.927

0.482


Multiple sequence alignment