Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LG36_RS09010 Genome accession   NZ_CP009472
Coordinates   1892808..1893455 (-) Length   215 a.a.
NCBI ID   WP_038601812.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1887808..1898455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS08985 (LG36_1723) atpF 1887879..1888385 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  LG36_RS08990 (LG36_1724) atpB 1888400..1889113 (-) 714 WP_038601808.1 F0F1 ATP synthase subunit A -
  LG36_RS08995 (LG36_1725) - 1889158..1889373 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LG36_RS09000 (LG36_1726) - 1889557..1890333 (-) 777 WP_029344289.1 alpha/beta hydrolase family protein -
  LG36_RS09005 (LG36_1727) comEC 1890617..1892827 (-) 2211 WP_038601811.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LG36_RS09010 (LG36_1728) comEA 1892808..1893455 (-) 648 WP_038601812.1 ComEA family DNA-binding protein Machinery gene
  LG36_RS09015 (LG36_1729) - 1893515..1894876 (-) 1362 WP_038601815.1 ABC transporter permease -
  LG36_RS09020 (LG36_1730) - 1894873..1895805 (-) 933 WP_038601819.1 ABC transporter ATP-binding protein -
  LG36_RS09025 (LG36_1731) - 1895909..1896307 (-) 399 WP_038601821.1 hypothetical protein -
  LG36_RS09030 (LG36_1732) - 1896411..1896974 (-) 564 WP_038601823.1 GNAT family N-acetyltransferase -
  LG36_RS09035 (LG36_1733) - 1897147..1898325 (-) 1179 WP_038601825.1 SLC13 family permease -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23620.86 Da        Isoelectric Point: 4.9882

>NTDB_id=129650 LG36_RS09010 WP_038601812.1 1892808..1893455(-) (comEA) [Lactococcus lactis strain AI06]
MDKILEKIKEYWKMIVLVVCGLIAGGIFYVLTNGQKPTTNLSVENLSSVSRQSSVIKFSEPNEKSVSKIMVDLKGAVTKP
NVYQISSDERLIDLIKEAGGFTDQADQKSINLSAKLKDEEVIYVPKIGENSSTENTDSSANSVTSQVSTTTAKININQAD
LTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDELCFE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=129650 LG36_RS09010 WP_038601812.1 1892808..1893455(-) (comEA) [Lactococcus lactis strain AI06]
ATGGATAAGATTTTAGAAAAAATAAAAGAATACTGGAAAATGATTGTTTTAGTTGTTTGTGGGCTTATTGCTGGTGGGAT
TTTTTACGTTTTAACCAACGGTCAAAAGCCAACTACAAATCTGTCAGTAGAAAATTTAAGTTCTGTCAGCAGGCAAAGCT
CTGTCATCAAATTTAGTGAACCTAATGAAAAATCTGTCAGTAAAATTATGGTTGATTTAAAAGGTGCGGTAACAAAACCT
AATGTCTATCAAATTTCGTCAGATGAACGTCTAATTGATTTAATTAAAGAAGCTGGTGGTTTTACTGACCAAGCTGACCA
GAAATCAATTAATCTGTCAGCAAAATTAAAAGATGAAGAAGTAATTTATGTCCCAAAAATTGGTGAAAATTCAAGCACAG
AAAATACTGATAGCTCTGCTAATTCGGTCACTAGTCAAGTCTCAACAACCACTGCAAAAATAAATATCAATCAAGCAGAT
TTAACAGAATTACAAAAATTAACAGGTGTTGGTCAGAAAAAAGCTCAAGACATCATTGATTTTCGAACGAAAAATGGTGA
TTTCAAATCACTTGAAGACTTGGGAAAAGTTTCTGGTTTTGGAGATAAAACACTAGAAAAATTGAAAGATGAGTTGTGTT
TTGAATAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-125)

Helix-hairpin-helix motif (HHH_3)

(152-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

75.229

100

0.763
  comEA/celA/cilE Streptococcus mitis SK321

45.37

100

0.456
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

44.037

100

0.447
  comEA/celA/cilE Streptococcus mitis NCTC 12261

42.202

100

0.428
  comEA/celA/cilE Streptococcus pneumoniae Rx1

42.009

100

0.428
  comEA/celA/cilE Streptococcus pneumoniae D39

42.009

100

0.428
  comEA/celA/cilE Streptococcus pneumoniae R6

42.009

100

0.428
  comEA Latilactobacillus sakei subsp. sakei 23K

37.004

100

0.391

Multiple sequence alignment