Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BF38_RS23050 Genome accession   NZ_CP009335
Coordinates   3812516..3813097 (-) Length   193 a.a.
NCBI ID   WP_000991625.1    Uniprot ID   A0A2A8KY00
Organism   Bacillus thuringiensis strain HD1011     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3807516..3818097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF38_RS23025 (BF38_3954) - 3807863..3808687 (-) 825 WP_000557568.1 PP2C family serine/threonine-protein phosphatase -
  BF38_RS34540 - 3808671..3808766 (-) 96 Protein_3839 HIT family protein -
  BF38_RS23030 (BF38_3955) - 3808953..3809120 (-) 168 WP_042996087.1 hypothetical protein -
  BF38_RS23035 (BF38_3956) - 3809407..3810243 (-) 837 WP_001084757.1 ABC transporter permease -
  BF38_RS23040 (BF38_3957) - 3810236..3811441 (-) 1206 WP_000370609.1 quaternary amine ABC transporter ATP-binding protein -
  BF38_RS23045 (BF38_3958) - 3811613..3812470 (+) 858 WP_001227634.1 glycine betaine ABC transporter substrate-binding protein -
  BF38_RS23050 (BF38_3959) clpP 3812516..3813097 (-) 582 WP_000991625.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  BF38_RS23055 (BF38_3960) - 3813119..3813805 (-) 687 WP_000337505.1 RNA polymerase subunit sigma-70 -
  BF38_RS23060 (BF38_3961) - 3813949..3814269 (+) 321 WP_001125390.1 2Fe-2S iron-sulfur cluster-binding protein -
  BF38_RS23065 (BF38_3962) rpiA 3814274..3814936 (+) 663 WP_001050001.1 ribose 5-phosphate isomerase A -
  BF38_RS23070 (BF38_3963) - 3815043..3815477 (+) 435 WP_000555785.1 GNAT family N-acetyltransferase -
  BF38_RS23075 (BF38_3964) - 3815608..3816975 (-) 1368 WP_001065248.1 lytic polysaccharide monooxygenase -
  BF38_RS23080 (BF38_3965) - 3817412..3817930 (-) 519 WP_000720566.1 DNA topology modulation protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21178.42 Da        Isoelectric Point: 5.0776

>NTDB_id=128701 BF38_RS23050 WP_000991625.1 3812516..3813097(-) (clpP) [Bacillus thuringiensis strain HD1011]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=128701 BF38_RS23050 WP_000991625.1 3812516..3813097(-) (clpP) [Bacillus thuringiensis strain HD1011]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATACTCAAGGTTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGCTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCACAAGGGCAAGCGA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8KY00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544
  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544
  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487

Multiple sequence alignment