Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   JL26_RS05960 Genome accession   NZ_CP009158
Coordinates   1189061..1190323 (-) Length   420 a.a.
NCBI ID   WP_026917118.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1184061..1195323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL26_RS05925 (JL26_06135) - 1184074..1184493 (+) 420 WP_005714137.1 hotdog fold thioesterase -
  JL26_RS12550 - 1185045..1185332 (-) 288 WP_016528248.1 hypothetical protein -
  JL26_RS05935 (JL26_06150) trxA 1185877..1186191 (-) 315 WP_015940165.1 thioredoxin -
  JL26_RS05940 (JL26_06155) - 1186488..1187117 (-) 630 WP_005712495.1 LysE family transporter -
  JL26_RS05945 (JL26_06160) - 1187119..1187589 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  JL26_RS05950 (JL26_06165) thiL 1187592..1188560 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  JL26_RS05955 (JL26_06170) nusB 1188569..1188982 (-) 414 WP_005712500.1 transcription antitermination factor NusB -
  JL26_RS05960 (JL26_06175) comE 1189061..1190323 (-) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  JL26_RS05965 (JL26_06180) comD 1190333..1190674 (-) 342 WP_232422128.1 hypothetical protein Machinery gene
  JL26_RS05970 (JL26_06185) comC 1190719..1191249 (-) 531 WP_015940159.1 hypothetical protein Machinery gene
  JL26_RS05975 (JL26_06190) comB 1191246..1191767 (-) 522 WP_005712507.1 hypothetical protein Machinery gene
  JL26_RS05980 (JL26_06195) comA 1191743..1192420 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  JL26_RS05985 - 1192574..1195129 (+) 2556 WP_035498541.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 47095.07 Da        Isoelectric Point: 8.9232

>NTDB_id=127119 JL26_RS05960 WP_026917118.1 1189061..1190323(-) (comE) [Glaesserella parasuis strain SH03]
MRYLFLLFFATFPVLANQQISLSIRNAPTAEIISYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSENGYLHFDDRSNSIIVKDSAASVK
NFTQLIESLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQMNNMMATIDKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKREL
VIFVTPYIVKSEKMGAEKQK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=127119 JL26_RS05960 WP_026917118.1 1189061..1190323(-) (comE) [Glaesserella parasuis strain SH03]
ATGCGTTATTTATTCCTGCTATTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCACTTTCGATAAGAAATGC
CCCAACGGCAGAGATTATTAGTTATTTGGCGGAGGAAACTGGAAAGAATATTACAATTTCGGATGAAATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTAATAGAGTCTTTGACAAAAGGGCAAGGCAACT
TGCTATCAGAGAATGGTTATCTTCATTTTGATGATCGCAGTAATAGTATTATCGTCAAAGACAGTGCCGCCTCAGTTAAA
AACTTTACTCAACTTATCGAAAGCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACGATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGAAACTTAG
AGGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCCGTTGCCTTACAAATTGCC
GCTATCAACAGCCGTGTACTTCATTTAGAACTCACCGCATTAGAGAGCGAAAATAACATTGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAGATTCCTTATGCAATGTACAGTAAGAAAAAGG
AAATCACCGATATTGAATTTCGTGAAGCGGTTTTGGGGCTAGAAGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGATCTTGCCATTAGCCAAAATTCGCCAAATAACCAGATGAACAATATGATGGCAACGATTGATAAACAAGAAATTAA
TACACAAGTCCTTGCTAAACACGGCGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTCCCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAACCGAGATAAAATCTCTAAACGGGAGCTG
GTTATTTTTGTTACGCCTTATATTGTAAAATCTGAAAAAATGGGAGCGGAAAAGCAGAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(110-175)

Bacterial type II and III secretion system protein (Secretin)

(253-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

97.381

100

0.974
  comE Haemophilus influenzae Rd KW20

52.706

100

0.533
  comE Haemophilus influenzae 86-028NP

51.765

100

0.524
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.681

98.571

0.371
  pilQ Vibrio cholerae strain A1552

37.681

98.571

0.371
  pilQ Vibrio campbellii strain DS40M4

36.493

100

0.367

Multiple sequence alignment