Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JL26_RS05980 Genome accession   NZ_CP009158
Coordinates   1191743..1192420 (-) Length   225 a.a.
NCBI ID   WP_005712510.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186743..1197420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL26_RS05945 (JL26_06160) - 1187119..1187589 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  JL26_RS05950 (JL26_06165) thiL 1187592..1188560 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  JL26_RS05955 (JL26_06170) nusB 1188569..1188982 (-) 414 WP_005712500.1 transcription antitermination factor NusB -
  JL26_RS05960 (JL26_06175) comE 1189061..1190323 (-) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  JL26_RS05965 (JL26_06180) comD 1190333..1190674 (-) 342 WP_232422128.1 hypothetical protein Machinery gene
  JL26_RS05970 (JL26_06185) comC 1190719..1191249 (-) 531 WP_015940159.1 hypothetical protein Machinery gene
  JL26_RS05975 (JL26_06190) comB 1191246..1191767 (-) 522 WP_005712507.1 hypothetical protein Machinery gene
  JL26_RS05980 (JL26_06195) comA 1191743..1192420 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  JL26_RS05985 - 1192574..1195129 (+) 2556 WP_035498541.1 penicillin-binding protein 1A -
  JL26_RS05990 (JL26_06205) aroK 1195359..1195880 (+) 522 WP_015940157.1 shikimate kinase AroK -
  JL26_RS05995 (JL26_06210) aroB 1195895..1196983 (+) 1089 WP_021115647.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26299.31 Da        Isoelectric Point: 7.3026

>NTDB_id=127123 JL26_RS05980 WP_005712510.1 1191743..1192420(-) (comA) [Glaesserella parasuis strain SH03]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKITETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHFPHFYPYLIALGASLWNGKVSI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=127123 JL26_RS05980 WP_005712510.1 1191743..1192420(-) (comA) [Glaesserella parasuis strain SH03]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAGCAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATCTGGCGAAAAACCTTAATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCTCTAAGAAAAAGCAACAGCTTTG
ACCCAACGGCTATTTTAGATTGCGAACTCTACTGCCTACTACGAGCGGTAGGATTTCTGACAAAAATAACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACACTTTCCCCATTTTTATCCTTATCTTATTGCAT
TAGGAGCGAGCTTATGGAATGGCAAGGTATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

98.667

100

0.987

Multiple sequence alignment