Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | JL26_RS05965 | Genome accession | NZ_CP009158 |
| Coordinates | 1190333..1190674 (-) | Length | 113 a.a. |
| NCBI ID | WP_232422128.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SH03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1185333..1195674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JL26_RS05935 (JL26_06150) | trxA | 1185877..1186191 (-) | 315 | WP_015940165.1 | thioredoxin | - |
| JL26_RS05940 (JL26_06155) | - | 1186488..1187117 (-) | 630 | WP_005712495.1 | LysE family transporter | - |
| JL26_RS05945 (JL26_06160) | - | 1187119..1187589 (-) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| JL26_RS05950 (JL26_06165) | thiL | 1187592..1188560 (-) | 969 | WP_021110497.1 | thiamine-phosphate kinase | - |
| JL26_RS05955 (JL26_06170) | nusB | 1188569..1188982 (-) | 414 | WP_005712500.1 | transcription antitermination factor NusB | - |
| JL26_RS05960 (JL26_06175) | comE | 1189061..1190323 (-) | 1263 | WP_026917118.1 | type IV pilus secretin PilQ | Machinery gene |
| JL26_RS05965 (JL26_06180) | comD | 1190333..1190674 (-) | 342 | WP_232422128.1 | hypothetical protein | Machinery gene |
| JL26_RS05970 (JL26_06185) | comC | 1190719..1191249 (-) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| JL26_RS05975 (JL26_06190) | comB | 1191246..1191767 (-) | 522 | WP_005712507.1 | hypothetical protein | Machinery gene |
| JL26_RS05980 (JL26_06195) | comA | 1191743..1192420 (-) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| JL26_RS05985 | - | 1192574..1195129 (+) | 2556 | WP_035498541.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13176.92 Da Isoelectric Point: 5.1438
>NTDB_id=127120 JL26_RS05965 WP_232422128.1 1190333..1190674(-) (comD) [Glaesserella parasuis strain SH03]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYINWQKTENCQSPKLFTSKF
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYINWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=127120 JL26_RS05965 WP_232422128.1 1190333..1190674(-) (comD) [Glaesserella parasuis strain SH03]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATCCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTAATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATCCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTAATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
93.805 |
100 |
0.938 |