Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | YQ19_RS11155 | Genome accession | NZ_CP011317 |
| Coordinates | 2324578..2324901 (+) | Length | 107 a.a. |
| NCBI ID | WP_012075039.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain Carb01 63 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2319578..2329901
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YQ19_RS11140 (YQ19_11140) | - | 2320378..2321334 (+) | 957 | WP_012075037.1 | UDP-glucose 4-epimerase family protein | - |
| YQ19_RS11145 (YQ19_11145) | - | 2321336..2322355 (+) | 1020 | WP_003150897.1 | MraY family glycosyltransferase | - |
| YQ19_RS11150 (YQ19_11150) | - | 2322390..2324387 (+) | 1998 | WP_025297832.1 | polysaccharide biosynthesis protein | - |
| YQ19_RS11155 (YQ19_11155) | comEA/comE1 | 2324578..2324901 (+) | 324 | WP_012075039.1 | ComEA family DNA-binding protein | Machinery gene |
| YQ19_RS11165 (YQ19_11165) | - | 2325119..2326315 (-) | 1197 | WP_012075040.1 | amino acid aminotransferase | - |
| YQ19_RS11170 (YQ19_11170) | uvrB | 2326502..2328514 (+) | 2013 | WP_003104590.1 | excinuclease ABC subunit UvrB | Machinery gene |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 11265.23 Da Isoelectric Point: 7.1662
>NTDB_id=126900 YQ19_RS11155 WP_012075039.1 2324578..2324901(+) (comEA/comE1) [Pseudomonas aeruginosa strain Carb01 63]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATMPTEASTAEVVNINTADEATLVRGLKGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATMPTEASTAEVVNINTADEATLVRGLKGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE
Nucleotide
Download Length: 324 bp
>NTDB_id=126900 YQ19_RS11155 WP_012075039.1 2324578..2324901(+) (comEA/comE1) [Pseudomonas aeruginosa strain Carb01 63]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAATGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAAGGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGTTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAATGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAAGGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGTTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
42.308 |
97.196 |
0.411 |
| comEA | Vibrio cholerae C6706 |
40.385 |
97.196 |
0.393 |
| comEA | Vibrio cholerae strain A1552 |
40.385 |
97.196 |
0.393 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.777 |
96.262 |
0.393 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
42.268 |
90.654 |
0.383 |
| comEA | Acinetobacter baumannii strain A118 |
30.303 |
100 |
0.374 |
| comEA | Acinetobacter baylyi ADP1 |
54.054 |
69.159 |
0.374 |