Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   VT08_RS04855 Genome accession   NZ_CP011069
Coordinates   986100..986288 (-) Length   62 a.a.
NCBI ID   WP_002993136.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB09014     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 981100..991288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT08_RS04830 (VT08_04845) - 982904..983275 (+) 372 WP_002989617.1 GntR family transcriptional regulator -
  VT08_RS04835 (VT08_04850) - 983275..983973 (+) 699 WP_002984437.1 ABC transporter ATP-binding protein -
  VT08_RS04840 (VT08_04855) - 983983..984768 (+) 786 WP_002984433.1 hypothetical protein -
  VT08_RS04845 (VT08_04860) - 984895..985509 (-) 615 WP_002989607.1 TVP38/TMEM64 family protein -
  VT08_RS04855 (VT08_04865) prx 986100..986288 (-) 189 WP_002993136.1 hypothetical protein Regulator
  VT08_RS04860 (VT08_04870) mf2 986528..987286 (+) 759 WP_011184727.1 DNase Mf2 -
  VT08_RS04865 (VT08_04875) speC 987397..988104 (+) 708 WP_002985327.1 streptococcal pyrogenic exotoxin SpeC -
  VT08_RS04870 (VT08_04880) - 988180..989514 (-) 1335 WP_011284838.1 GH25 family lysozyme -
  VT08_RS04875 (VT08_04890) - 989626..989811 (-) 186 WP_011284839.1 holin -
  VT08_RS04880 (VT08_04895) - 989808..990104 (-) 297 WP_002990012.1 hypothetical protein -
  VT08_RS04885 (VT08_04900) - 990115..990732 (-) 618 WP_011284840.1 hypothetical protein -
  VT08_RS09315 - 990735..990896 (-) 162 WP_002988795.1 hypothetical protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7239.28 Da        Isoelectric Point: 3.9944

>NTDB_id=126050 VT08_RS04855 WP_002993136.1 986100..986288(-) (prx) [Streptococcus pyogenes strain STAB09014]
MLTYDEFKQAIDNGYITGDTVIIVRKNGQIFDYVLPGEKVRPWEVVTEEVVEEVMVELDYIK

Nucleotide


Download         Length: 189 bp        

>NTDB_id=126050 VT08_RS04855 WP_002993136.1 986100..986288(-) (prx) [Streptococcus pyogenes strain STAB09014]
ATGCTAACATACGACGAATTTAAGCAAGCAATTGACAACGGATATATCACAGGAGACACAGTAATAATCGTGCGCAAAAA
CGGACAGATTTTTGATTATGTGTTGCCTGGTGAGAAAGTCAGACCATGGGAGGTTGTGACCGAGGAGGTAGTGGAAGAAG
TGATGGTGGAATTAGACTATATCAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

85.484

100

0.855
  prx Streptococcus pyogenes MGAS8232

82.759

93.548

0.774
  prx Streptococcus pyogenes MGAS315

81.356

95.161

0.774
  prx Streptococcus pyogenes MGAS315

81.356

95.161

0.774
  prx Streptococcus pyogenes MGAS315

79.31

93.548

0.742
  prx Streptococcus pyogenes MGAS315

95.238

67.742

0.645
  prx Streptococcus pyogenes MGAS315

80.488

66.129

0.532