Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HY57_RS07995 Genome accession   NZ_CP008884
Coordinates   1937499..1938761 (-) Length   420 a.a.
NCBI ID   WP_019467312.1    Uniprot ID   A0A075JYS8
Organism   Dyella japonica A8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932499..1943761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HY57_RS07965 (HY57_08120) lgt 1932657..1933547 (+) 891 WP_019467306.1 prolipoprotein diacylglyceryl transferase -
  HY57_RS07970 (HY57_08125) - 1933551..1934345 (+) 795 WP_019467307.1 thymidylate synthase -
  HY57_RS07975 (HY57_08130) - 1934498..1934986 (+) 489 WP_019467308.1 dihydrofolate reductase -
  HY57_RS07980 (HY57_08135) - 1934999..1935952 (+) 954 WP_019467309.1 Nudix family hydrolase -
  HY57_RS07985 (HY57_08140) coaE 1935954..1936577 (-) 624 WP_019467310.1 dephospho-CoA kinase -
  HY57_RS07990 (HY57_08145) pilD 1936574..1937431 (-) 858 WP_019467311.1 A24 family peptidase Machinery gene
  HY57_RS07995 (HY57_08150) pilC 1937499..1938761 (-) 1263 WP_019467312.1 type II secretion system F family protein Machinery gene
  HY57_RS08000 (HY57_08155) pilB 1938922..1940643 (-) 1722 WP_026034290.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HY57_RS08005 (HY57_08160) - 1940895..1942043 (+) 1149 WP_019467314.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  HY57_RS08010 (HY57_08165) - 1942164..1943018 (+) 855 WP_019467315.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45877.10 Da        Isoelectric Point: 10.0856

>NTDB_id=125437 HY57_RS07995 WP_019467312.1 1937499..1938761(-) (pilC) [Dyella japonica A8]
MAAATAKNVKPISAQRAEVSKLTTYDWIALDKRGKRMKGDMAAKNASLVKAELRRQGMNPQTVKERGKPLFGASGSSVQP
RDVAIFSRQIATMMASGVPMVQSFEIIADGQKNVRFKNMLTDVKQTIEGGAALHEALGKYPVQFDELYRNLVHAGESAGV
LDTVLDTVATYKERTEAIKAKIKKAMFYPVMVMAVAFLVCVIMLLFVVPVFAQTFKDAGTSLPAPTQVVVSMSEFMKSYW
WALLIGIVGGVSALIFFKKRSTKFAHFLDRFLLKFPVIGNILRQSALARFARTLGVTFRAGVPLVEAMDAVSGATGSIVY
GDAVKQMREDVAVGHQLQLSMRQTGLFPNMMVQMVGIGEESGALDHMLFKVAEFYEEEVNNAVDTLSSLLEPLIMVILGV
LVGGMVIALYLPIFKLASTV

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=125437 HY57_RS07995 WP_019467312.1 1937499..1938761(-) (pilC) [Dyella japonica A8]
ATGGCTGCGGCCACCGCCAAGAACGTCAAGCCGATCAGCGCCCAGCGCGCCGAGGTCAGCAAGCTGACAACCTACGACTG
GATCGCCCTCGACAAGCGCGGCAAGCGCATGAAGGGCGACATGGCGGCCAAGAACGCCTCGCTCGTCAAGGCCGAGCTGC
GCCGCCAGGGCATGAACCCGCAGACCGTGAAGGAGCGCGGCAAGCCGCTGTTCGGCGCCTCGGGAAGCTCGGTCCAGCCA
CGCGACGTGGCGATCTTCAGCCGCCAGATCGCCACCATGATGGCCTCCGGCGTGCCGATGGTGCAGTCCTTCGAGATCAT
CGCCGACGGCCAGAAGAACGTCCGCTTCAAGAACATGCTGACGGACGTGAAGCAGACCATCGAAGGTGGTGCGGCGCTCC
ACGAAGCCCTGGGCAAGTACCCCGTCCAGTTCGACGAGCTCTACCGCAACCTGGTGCATGCGGGTGAGTCGGCGGGTGTG
CTCGACACGGTGCTGGATACCGTGGCCACCTACAAGGAACGCACGGAAGCCATCAAGGCCAAAATCAAGAAGGCCATGTT
CTACCCCGTGATGGTCATGGCCGTGGCCTTCCTGGTCTGCGTCATCATGCTGCTGTTCGTGGTGCCGGTGTTTGCCCAGA
CCTTCAAGGACGCCGGCACCTCACTGCCCGCGCCAACGCAGGTCGTGGTATCCATGTCCGAGTTCATGAAGTCCTACTGG
TGGGCCCTGCTCATCGGCATCGTGGGCGGCGTCTCGGCGCTCATCTTCTTCAAGAAGCGCTCCACCAAGTTCGCGCACTT
CCTCGACCGTTTCCTGCTGAAGTTCCCGGTGATCGGCAACATCCTCCGGCAGTCGGCGCTGGCGCGCTTCGCGCGCACGC
TGGGCGTGACCTTCCGTGCCGGTGTGCCGCTGGTGGAAGCGATGGATGCCGTCTCCGGCGCCACCGGCAGCATCGTCTAC
GGCGATGCCGTGAAGCAGATGCGCGAGGACGTCGCCGTCGGCCACCAGCTGCAGCTGTCGATGCGCCAGACCGGCCTGTT
CCCGAACATGATGGTGCAGATGGTGGGCATCGGCGAGGAATCCGGTGCGCTCGACCACATGCTGTTCAAGGTCGCCGAGT
TCTACGAAGAGGAAGTGAACAACGCGGTGGATACGCTCTCCAGCCTGCTCGAGCCGCTGATCATGGTGATCCTCGGCGTG
CTGGTCGGCGGCATGGTGATCGCGCTGTACCTGCCGATCTTCAAGCTCGCCAGCACCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(86-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075JYS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54

95.238

0.514
  pilC Pseudomonas stutzeri DSM 10701

51.5

95.238

0.49
  pilC Acinetobacter baumannii D1279779

49

95.238

0.467
  pilC Acinetobacter baylyi ADP1

47.073

97.619

0.46
  pilG Neisseria meningitidis 44/76-A

41.71

91.905

0.383
  pilG Neisseria gonorrhoeae MS11

41.192

91.905

0.379
  pilC Vibrio campbellii strain DS40M4

38.462

95.952

0.369
  pilC Vibrio cholerae strain A1552

38.346

95

0.364

Multiple sequence alignment