Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   TK78_RS17385 Genome accession   NZ_CP010833
Coordinates   3964587..3965717 (+) Length   376 a.a.
NCBI ID   WP_075265320.1    Uniprot ID   A0ABT7DFE1
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3959587..3970717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS17375 (TK78_17030) dnaN 3962344..3963474 (+) 1131 WP_032764581.1 DNA polymerase III subunit beta -
  TK78_RS17380 (TK78_17035) gnd 3963636..3964520 (+) 885 WP_010060412.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  TK78_RS17385 (TK78_17040) recF 3964587..3965717 (+) 1131 WP_075265320.1 DNA replication/repair protein RecF Machinery gene
  TK78_RS17390 (TK78_17045) - 3965786..3966289 (+) 504 WP_024263702.1 DciA family protein -
  TK78_RS17395 (TK78_17050) gyrB 3966716..3968788 (+) 2073 WP_075265322.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40851.49 Da        Isoelectric Point: 6.8621

>NTDB_id=124737 TK78_RS17385 WP_075265320.1 3964587..3965717(+) (recF) [Streptomyces sp. Tue 6075 strain Tue6075]
MHVTHLSLADFRSYARVEVPLDPGITAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGDDVG
PERTRDELYEQLIAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGTRYAVSAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=124737 TK78_RS17385 WP_075265320.1 3964587..3965717(+) (recF) [Streptomyces sp. Tue 6075 strain Tue6075]
ATGCACGTCACGCACCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCATCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAATCTCGTCGAGGCAGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTGGTGCGCATGGGCGCGGAGCGGGCGGTGATCCGGGCGGCGGTGACCCAGGGCGAGCGCTCG
CAGCTGGTCGAGCTGGAGCTGAATCCGGGCCGGGCGAACCGGGCCCGTATCAACAGGTCGTCGCAGGTCAGACCGCGTGA
TGTGCTCGGCATCGTACGGACCGTGCTGTTCGCCCCGGAGGACTTGGCGCTGGTCAAGGGCGACCCCGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGTTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAACGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCCGCGATGGCCCGGCGGCACGGCGGCCGCTCGATGGATCTGTCCACCCTGGACGTCTG
GGACCAGCACCTGGGCCGGGTGGGCGCCGAGTTGCTCGCGCAGCGCCTCGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTGGCGCCGGGCGGCGGTCCGGTGGCGCTGGAGTACCGCAGCTCGGTCGGCGACGACGTGGGT
CCCGAGCGCACCCGCGACGAGCTGTACGAGCAGTTGATCGCGGCGCTCGCGGGCGTCCGGAAGCAGGAGATCGAGCGGGG
CGTGACGCTGGTCGGCCCGCACCGCGACGATCTGCTGCTGGGCCTGCGGGGGATGCCTGCCAAGGGGTATGCGAGTCACG
GCGAGTCCTGGAGCTATGCGCTGGCGCTGCGGCTCGCCAGTTACGAGCTGCTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTCCTGGACGATGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCCGGTGAGCAGGT
GCTGGTGACGGCCGCGGTCGCGGAGGACGTGCCGGGCGTGCTGGCGGGGACGCGGTACGCGGTGTCCGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.534

97.074

0.364

Multiple sequence alignment