Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   GT95_RS01070 Genome accession   NZ_CP008813
Coordinates   184670..185083 (+) Length   137 a.a.
NCBI ID   WP_017646959.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain C001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 179670..190083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT95_RS01045 (GT95_01020) - 181924..182289 (+) 366 WP_000285373.1 DUF1033 family protein -
  GT95_RS01055 (GT95_01025) comYA 182461..183432 (+) 972 WP_069107363.1 competence type IV pilus ATPase ComGA Machinery gene
  GT95_RS01060 (GT95_01030) comYB 183326..184369 (+) 1044 WP_228322108.1 competence type IV pilus assembly protein ComGB Machinery gene
  GT95_RS01065 (GT95_01035) comGC/cglC 184366..184695 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  GT95_RS01070 (GT95_01040) comYD 184670..185083 (+) 414 WP_017646959.1 competence type IV pilus minor pilin ComGD Machinery gene
  GT95_RS01075 (GT95_01045) comGE 185055..185354 (+) 300 WP_025195478.1 competence type IV pilus minor pilin ComGE -
  GT95_RS01080 (GT95_01050) comGF 185308..185769 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF -
  GT95_RS01085 (GT95_01055) comGG 185747..186118 (+) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG -
  GT95_RS01090 (GT95_01060) comYH 186233..187207 (+) 975 WP_001008568.1 class I SAM-dependent methyltransferase Machinery gene
  GT95_RS01095 (GT95_01065) - 187239..188432 (+) 1194 WP_000047537.1 acetate kinase -
  GT95_RS01100 (GT95_01070) - 188584..188790 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  GT95_RS01105 - 188849..188986 (+) 138 WP_079263416.1 hypothetical protein -
  GT95_RS01110 (GT95_01075) - 189089..189481 (+) 393 WP_001265365.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15910.35 Da        Isoelectric Point: 9.9787

>NTDB_id=124405 GT95_RS01070 WP_017646959.1 184670..185083(+) (comYD) [Streptococcus agalactiae strain C001]
MVLRKFQVKAFTVLESLIALSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=124405 GT95_RS01070 WP_017646959.1 184670..185083(+) (comYD) [Streptococcus agalactiae strain C001]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGCATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAACTATCGTA
AGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

51.515

96.35

0.496
  comYD Streptococcus mutans UA159

51.515

96.35

0.496
  comYD Streptococcus gordonii str. Challis substr. CH1

46.667

98.54

0.46
  comGD/cglD Streptococcus mitis NCTC 12261

40.299

97.81

0.394
  comGD/cglD Streptococcus pneumoniae TIGR4

42.52

92.701

0.394
  comGD/cglD Streptococcus mitis SK321

42.52

92.701

0.394
  comGD/cglD Streptococcus pneumoniae Rx1

41.732

92.701

0.387
  comGD/cglD Streptococcus pneumoniae D39

41.732

92.701

0.387
  comGD/cglD Streptococcus pneumoniae R6

41.732

92.701

0.387

Multiple sequence alignment