Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | VAA049_RS07115 | Genome accession | NZ_CP010811 |
| Coordinates | 1551718..1552098 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae strain 1154-74 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1546718..1557098
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VAA049_RS07090 (VAA049_1405) | - | 1547310..1547966 (+) | 657 | WP_000974697.1 | HEAT repeat domain-containing protein | - |
| VAA049_RS07095 (VAA049_1406) | - | 1547977..1548822 (+) | 846 | WP_001002907.1 | protein-glutamate O-methyltransferase CheR | - |
| VAA049_RS07100 (VAA049_1407) | - | 1548822..1549193 (+) | 372 | WP_000757478.1 | PleD family two-component system response regulator | - |
| VAA049_RS07105 (VAA049_1408) | - | 1549202..1551475 (+) | 2274 | WP_046121632.1 | chemotaxis protein CheA | - |
| VAA049_RS07110 (VAA049_1409) | - | 1551465..1551725 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| VAA049_RS07115 (VAA049_1410) | pilL-C | 1551718..1552098 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| VAA049_RS07120 (VAA049_1411) | - | 1552106..1553341 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| VAA049_RS07125 (VAA049_1412) | - | 1553396..1553710 (-) | 315 | WP_000312389.1 | multidrug efflux SMR transporter | - |
| VAA049_RS07130 (VAA049_1413) | - | 1553870..1555384 (-) | 1515 | WP_046121633.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| VAA049_RS07135 (VAA049_1414) | - | 1555540..1556946 (-) | 1407 | WP_000555314.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=124406 VAA049_RS07115 WP_000045526.1 1551718..1552098(+) (pilL-C) [Vibrio cholerae strain 1154-74]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=124406 VAA049_RS07115 WP_000045526.1 1551718..1552098(+) (pilL-C) [Vibrio cholerae strain 1154-74]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |