Detailed information NTG0123015

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: BMMGA3_RS14190
• Genome accession: NZ_CP007739
• Coordinates: 2904225..2904830 (+)
• Length: 201 a.a.
• NCBI ID: WP_003349416.1
• Uniprot ID: I3DU99
• Organism: Bacillus methanolicus MGA3
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2899225..2909830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BMMGA3_RS14165 (BMMGA3_14660)	gap	2899839..2900846 (-)	1008	WP_003349423.1	type I glyceraldehyde-3-phosphate dehydrogenase	-
BMMGA3_RS14170 (BMMGA3_14665)	-	2900894..2901925 (-)	1032	WP_003349422.1	sugar-binding transcriptional regulator	-
BMMGA3_RS14175 (BMMGA3_14670)	-	2902056..2902307 (-)	252	WP_003349420.1	glutaredoxin family protein	-
BMMGA3_RS14180 (BMMGA3_14675)	rpoN	2902323..2903654 (-)	1332	WP_003349418.1	RNA polymerase factor sigma-54	-
BMMGA3_RS14190 (BMMGA3_14685)	clpP	2904225..2904830 (+)	606	WP_003349416.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
BMMGA3_RS14195 (BMMGA3_14690)	-	2904930..2905187 (-)	258	WP_003349414.1	HPr family phosphocarrier protein	-
BMMGA3_RS14200 (BMMGA3_14695)	whiA	2905262..2906212 (-)	951	WP_003349413.1	DNA-binding protein WhiA	-
BMMGA3_RS14205 (BMMGA3_14700)	-	2906253..2907236 (-)	984	WP_003349411.1	gluconeogenesis factor YvcK family protein	-
BMMGA3_RS14210 (BMMGA3_14705)	rapZ	2907233..2908126 (-)	894	WP_003349409.1	RNase adapter RapZ	-
BMMGA3_RS14215 (BMMGA3_14710)	-	2908154..2908612 (-)	459	WP_003349407.1	NUDIX hydrolase	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22219.59 Da
• Isoelectric Point: 5.0569

>NTDB_id=123015 BMMGA3_RS14190 WP_003349416.1 2904225..2904830(+) (clpP) [Bacillus methanolicus MGA3]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTPIDDYVANSIVAQLLFLEAENPEKDISIYINSPGGSITAGMAIYDT
MQFIKPDVQTICIGMAASMGAFLLAAGTKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNQILSERTGQ
PVEVIAKDTDRDNFMTAQQALEYGLVDHIITRNSLEDKSKK

Nucleotide

• Length: 606 bp

>NTDB_id=123015 BMMGA3_RS14190 WP_003349416.1 2904225..2904830(+) (clpP) [Bacillus methanolicus MGA3]
ATGAATTTAATTCCTACAGTTATTGAACAAACAAACCGGGGAGAGCGTGCATATGACATTTACTCCCGCCTACTTAAAGA
CCGTATTATTATGCTTGGAACCCCAATTGATGATTATGTAGCGAACTCAATTGTTGCCCAGCTGCTGTTCCTTGAAGCTG
AAAACCCTGAAAAAGATATCTCTATCTATATCAACAGCCCTGGCGGAAGCATTACTGCAGGTATGGCCATCTACGACACG
ATGCAATTTATTAAGCCTGACGTTCAAACGATTTGTATCGGAATGGCTGCTTCCATGGGTGCTTTCTTATTGGCAGCCGG
CACGAAAGGAAAGCGTTATGCCCTTCCAAACAGTGAAGTGATGATCCATCAGCCGCTTGGCGGTGCCCAAGGCCAGGCAA
CAGAAATTGAGATCGCCGCAAAACGTATCTTGTTCCTTCGTGACAAGTTAAATCAAATCCTTTCAGAACGTACTGGACAG
CCGGTTGAAGTCATCGCAAAAGATACTGACCGCGATAACTTTATGACTGCCCAGCAGGCGCTCGAATATGGGTTAGTTGA
CCACATCATTACAAGAAATTCTCTTGAGGATAAGAGTAAAAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

3D structure

• AlphaFold DB: I3DU99

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	85.354	98.507	0.841
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.586	95.025	0.652
clpP	Streptococcus thermophilus LMG 18311	60.204	97.512	0.587
clpP	Streptococcus thermophilus LMD-9	60.204	97.512	0.587
clpP	Lactococcus lactis subsp. cremoris KW2	59.694	97.512	0.582
clpP	Streptococcus pneumoniae D39	58.462	97.015	0.567
clpP	Streptococcus pneumoniae Rx1	58.462	97.015	0.567
clpP	Streptococcus pneumoniae R6	58.462	97.015	0.567
clpP	Streptococcus pneumoniae TIGR4	58.462	97.015	0.567
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	57.653	97.512	0.562
clpP	Streptococcus mutans UA159	56.345	98.01	0.552
clpP	Streptococcus pyogenes JRS4	56.122	97.512	0.547
clpP	Streptococcus pyogenes MGAS315	56.122	97.512	0.547