Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DF16_RS15330 Genome accession   NZ_CP007607
Coordinates   2901362..2901943 (-) Length   193 a.a.
NCBI ID   WP_000991610.1    Uniprot ID   A0A9W5QF48
Organism   Bacillus thuringiensis serovar kurstaki str. YBT-1520     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2896362..2906943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF16_RS15300 (DF16_orf03030) - 2896986..2897486 (-) 501 WP_003284488.1 HIT family protein -
  DF16_RS15305 (DF16_orf03031) - 2897578..2897745 (-) 168 WP_000508470.1 hypothetical protein -
  DF16_RS35435 (DF16_orf03032) - 2897963..2898199 (+) 237 WP_000283222.1 hypothetical protein -
  DF16_RS15315 (DF16_orf03033) - 2898253..2899089 (-) 837 WP_001084760.1 proline/glycine betaine ABC transporter permease -
  DF16_RS15320 (DF16_orf03034) - 2899082..2900287 (-) 1206 WP_000370606.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  DF16_RS15325 (DF16_orf03035) - 2900600..2901315 (+) 716 Protein_2950 glycine betaine ABC transporter substrate-binding protein -
  DF16_RS15330 (DF16_orf03037) clpP 2901362..2901943 (-) 582 WP_000991610.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  DF16_RS15335 (DF16_orf03038) - 2901965..2902651 (-) 687 WP_000337520.1 RNA polymerase subunit sigma-70 -
  DF16_RS15340 (DF16_orf03039) - 2902794..2903114 (+) 321 WP_038415310.1 2Fe-2S iron-sulfur cluster-binding protein -
  DF16_RS15345 rpiA 2903119..2903777 (+) 659 Protein_2954 ribose 5-phosphate isomerase A -
  DF16_RS15350 (DF16_orf03041) - 2903890..2904324 (+) 435 WP_001190864.1 GNAT family N-acetyltransferase -
  DF16_RS15355 (DF16_orf03042) - 2904451..2905818 (-) 1368 WP_038415312.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21192.45 Da        Isoelectric Point: 5.0776

>NTDB_id=121654 DF16_RS15330 WP_000991610.1 2901362..2901943(-) (clpP) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=121654 DF16_RS15330 WP_000991610.1 2901362..2901943(-) (clpP) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGCTCAGAAATTAATGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAAAAAGATATATTCTTATACATCAATAGCCCTGGCGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACGCTATGCATGGGCTTTGCGGCATCATTCGGTGCATTGTTATTATTATCAGG
AGCAAAAGGAAAACGGTTTGCTCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGACGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

97.927

0.513
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492

Multiple sequence alignment