Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WS08_RS00325 Genome accession   NZ_CP007588
Coordinates   66904..67440 (+) Length   178 a.a.
NCBI ID   WP_009495698.1    Uniprot ID   -
Organism   Weissella tructae strain WS08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 61904..72440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS08_RS00300 (WS08_0044) purR 62304..63155 (+) 852 WP_009495703.1 pur operon repressor -
  WS08_RS00305 (WS08_0045) glmU 63196..64587 (+) 1392 WP_009495702.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  WS08_RS00310 (WS08_0046) - 64728..65735 (+) 1008 WP_009495701.1 ribose-phosphate diphosphokinase -
  WS08_RS00315 (WS08_0047) - 65816..66409 (+) 594 WP_009495700.1 DUF1054 family protein -
  WS08_RS00320 (WS08_0048) rpsF 66556..66852 (+) 297 WP_009495699.1 30S ribosomal protein S6 -
  WS08_RS00325 (WS08_0049) ssb 66904..67440 (+) 537 WP_009495698.1 single-stranded DNA-binding protein Machinery gene
  WS08_RS00330 (WS08_0050) rpsR 67488..67733 (+) 246 WP_009495697.1 30S ribosomal protein S18 -
  WS08_RS00345 (WS08_0051) yycF 68461..69165 (+) 705 WP_009495696.1 response regulator YycF -
  WS08_RS00350 (WS08_0052) walK 69234..71093 (+) 1860 WP_009495695.1 cell wall metabolism sensor histidine kinase WalK -
  WS08_RS00355 (WS08_0053) yycH 71086..72402 (+) 1317 WP_009495694.1 two-component system activity regulator YycH -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19289.87 Da        Isoelectric Point: 4.6085

>NTDB_id=121368 WS08_RS00325 WP_009495698.1 66904..67440(+) (ssb) [Weissella tructae strain WS08]
MINRVVLVGRLTRDVELRYTTSGAAVGTFSLAVNRQFTNANGEREADFINCVIWRKSAENFANFTSKGSQVAVEGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEQRRASTGNTAPAGNQNNNFGGQQNANAQQNPFGAPASNGGNVFNASSSSN
DPFGGGQEIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=121368 WS08_RS00325 WP_009495698.1 66904..67440(+) (ssb) [Weissella tructae strain WS08]
ATGATTAATCGTGTTGTATTAGTAGGGCGTTTGACGCGTGATGTTGAATTACGCTATACAACTTCAGGTGCAGCGGTTGG
TACATTCTCATTGGCGGTTAACCGTCAATTTACGAATGCCAACGGTGAACGTGAAGCGGATTTTATTAACTGTGTTATCT
GGCGCAAGTCAGCAGAGAATTTTGCTAACTTTACTTCAAAGGGATCTCAGGTCGCTGTTGAAGGACGACTACAAACACGT
AATTACGAGAATCAACAAGGACAACGTGTCTATGTGACTGAAGTTGTTGTTGATAACTTCTCATTGTTGGAAAGTCGTGC
TGAAAGCGAGCAACGTCGTGCTTCTACTGGAAACACAGCGCCTGCTGGTAATCAAAACAATAACTTTGGTGGTCAACAAA
ACGCCAATGCACAACAAAACCCATTTGGTGCACCTGCATCAAACGGCGGAAATGTGTTTAACGCGTCTAGTTCATCAAAT
GATCCTTTCGGTGGTGGTCAAGAGATTGATATCTCTGATGATGATCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

71.508

100

0.719
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.676

100

0.579

Multiple sequence alignment