Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SD90_RS01380 Genome accession   NZ_CP010450
Coordinates   261602..262153 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS638     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 256602..267153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD90_RS01380 (SD90_01380) comX/sigX/comX2/sigX2 261602..262153 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  SD90_RS01385 (SD90_01385) - 262764..263897 (+) 1134 WP_032463023.1 ISAs1-like element IS1548 family transposase -
  SD90_RS01395 (SD90_01395) - 264060..264587 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  SD90_RS01400 (SD90_01400) yqeH 264587..265705 (+) 1119 WP_053301454.1 ribosome biogenesis GTPase YqeH -
  SD90_RS01405 (SD90_01405) yhbY 265730..266038 (+) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  SD90_RS01410 (SD90_01410) - 266107..266739 (+) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=121368 SD90_RS01380 WP_010921894.1 261602..262153(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NGAS638]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=121368 SD90_RS01380 WP_010921894.1 261602..262153(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain NGAS638]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.